› 5x71

X-ray diffraction
2.57Å resolution

Crystal structure of Rice Dwarf Virus P5 in space group P212121

Released:
DOI: 10.2210/pdb5x71/pdb
PDB entry 5x71 coloured by chain, front view.
PDB entry 5x71 coloured by chain, side view.
PDB entry 5x71 coloured by chain, top view.
Source organism: Rice dwarf virus (isolate O)
Entry authors: Nakamichi Y, Higashiura A, Nakagawa A

Function and Biology Details

Reaction catalysed: 
GTP + a 5'-diphospho-[mRNA] = diphosphate + a 5'-(5'-triphosphoguanosine)-[mRNA]
Biochemical function:
Biological process:
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-146970 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative mRNA-capping enzyme P5 Chains: A, B
Molecule details ›
Chains: A, B
Length: 804 amino acids
Theoretical weight: 90.8 KDa
Source organism: Rice dwarf virus (isolate O)
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P14583 (Residues: 1-801; Coverage: 100%)

Ligands and Environments

1 bound ligand:
Ligand 5GP 2 x 5GP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: P212121
Unit cell:
a: 76.814Å b: 122.631Å c: 192.262Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.193 0.191 0.235
Expression system: Spodoptera frugiperda

Quick links