› 5wip

X-ray diffraction
2.62Å resolution

TraE protein in complex with 2-(2-furyl)isonicotinic acid

Released:
DOI: 10.2210/pdb5wip/pdb
PDB entry 5wip coloured by chain, front view.
PDB entry 5wip coloured by chain, side view.
PDB entry 5wip coloured by chain, top view.
Source organism: Escherichia coli
Primary publication:
Fragment-based screening identifies novel targets for inhibitors of conjugative transfer of antimicrobial resistance by plasmid pKM101.
Casu B, Arya T, Bessette B, Baron C
Sci Rep 7 14907 (2017)
PMID: 29097752

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172646 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Bacterial virulence protein VirB8 domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 163 amino acids
Theoretical weight: 18.82 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q17U16 (Residues: 70-232; Coverage: 70%)
Gene names: B634_00049, DNQ45_06125, EIZ93_17615, G3V95_21465, KKS20_p00140, KKS54_p00505, KKS75_p00105, RCS42_P0027, RCS45_P0026, SAMEA4370330_00063, pEcNDM0_00049, pHKU1_33, pMUR050_041, pN3_023, pec386IL_00125, traE, virB8
Sequence domains: VirB8 protein
Structure domains: VirB8 protein

Ligands and Environments

1 bound ligand:
Ligand XXO 1 x XXO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE F1
Spacegroup: C2221
Unit cell:
a: 112.39Å b: 124.089Å c: 109.914Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.221 0.217 0.274
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

7 review citations

Type IV secretion systems: Advances in structure, function, and activation.
Costa et al. (2021)
6 more

3 mentions without citation

Type IV Coupling Proteins as Potential Targets to Control the Dissemination of Antibiotic Resistance.
Álvarez-Rodríguez et al. (2020)
2 more