› 5wc4

X-ray diffraction
1.2Å resolution

Crystal structure of biphenyl synthase from Malus domestic complexed with benzoyl-CoA

Released:
DOI: 10.2210/pdb5wc4/pdb
PDB 5wc4 coloured by chain and viewed from the front.
PDB 5wc4 coloured by chain and viewed from the side.
PDB 5wc4 coloured by chain and viewed from the top.
Source organism: Malus domestica
Entry authors: Stewart Jr CE, Noel JP

Function and Biology Details

Reaction catalysed: 
3 malonyl-CoA + benzoyl-CoA = 4 CoA + 3,5-dihydroxybiphenyl + 4 CO(2)
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
BIS3 biphenyl synthase Chains: A, B
Molecule details ›
Chains: A, B
Length: 390 amino acids
Theoretical weight: 43.25 KDa
Source organism: Malus domestica
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: K9MST3 (Residues: 1-388; Coverage: 100%)
Sequence domains:
Structure domains: Peroxisomal Thiolase; Chain A, domain 1

Ligands and Environments


Cofactor: Ligand BYC 2 x BYC
1 bound ligand:
Ligand BU4 2 x BU4
1 modified residue:
Ligand CSD 2 x CSD

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.1
Spacegroup: P21
Unit cell:
a: 55.247Å b: 112.985Å c: 62.783Å
α: 90° β: 93.27° γ: 90°
R-values:
R R work R free
0.101 0.1 0.125
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

3 review citations

Xanthone Biosynthetic Pathway in Plants: A Review.
Remali et al. (2022)
2 more