› 5vy1

X-ray diffraction
3.05Å resolution

Crystal structure of the extended Tudor domain from BmPAPI

Released:
DOI: 10.2210/pdb5vy1/pdb
PDB entry 5vy1 coloured by chain, front view.
PDB entry 5vy1 coloured by chain, side view.
PDB entry 5vy1 coloured by chain, top view.
Source organism: Bombyx mori
Entry authors: Hubbard PA, Pan X, McNally R, Ohtaki A, Honda S, Kirino Y, Murali R

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-124936 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Tudor and KH domain-containing protein homolog Chains: A, B
Molecule details ›
Chains: A, B
Length: 237 amino acids
Theoretical weight: 26.95 KDa
Source organism: Bombyx mori
Expression system: Escherichia coli
UniProt:
  • Canonical: H9JD76 (Residues: 245-462; Coverage: 35%)
Gene name: PAPI
Sequence domains: Tudor domain
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007 HF
Spacegroup: P43212
Unit cell:
a: 65.717Å b: 65.717Å c: 225.431Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.255 0.253 0.296
Expression system: Escherichia coli

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