PDBe 5urf

Electron Microscopy
2.9Å resolution

The structure of human bocavirus 1

Released:

Function and Biology Details

Reaction catalysed:
Phosphatidylcholine + H(2)O = 1-acylglycerophosphocholine + a carboxylate
Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
homo 60-mer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Minor capsid protein VP1 Chains: 1, 2, 3, 4, 5, 6, 7, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z
Molecule details ›
Chains: 1, 2, 3, 4, 5, 6, 7, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z
Length: 542 amino acids
Theoretical weight: 60.57 KDa
Source organism: Human bocavirus 1
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q3YPH4 (Residues: 130-671; Coverage: 81%)
Gene name: VP1
Sequence domains: Parvovirus coat protein VP2

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.9Å
Relevant EMDB volumes: EMD-8598
Expression system: Spodoptera frugiperda