X-ray diffraction
3Å resolution

Crystal structure of 6-phosphogluconate dehydrogenase with ((4R,5R)-5-(hydroxycarbamoyl)-2,2-dimethyl-1,3-dioxolan-4-yl)methyl dihydrogen phosphate


Function and Biology Details

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
6-phosphogluconate dehydrogenase, decarboxylating Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 489 amino acids
Theoretical weight: 53.76 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
  • Canonical: P52209 (Residues: 1-483; Coverage: 100%)
Gene names: PGD, PGDH
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.3.1
Spacegroup: P21
Unit cell:
a: 87.311Å b: 164.93Å c: 133.199Å
α: 90° β: 91.43° γ: 90°
R R work R free
0.22 0.217 0.272
Expression system: Escherichia coli