› 5ukz

Solution NMR

NMR Solution structure of chemically synthesized antilisterial Pediocin PA-1 M31L analog.

Released:
DOI: 10.2210/pdb5ukz/pdb
PDB entry 5ukz coloured by chain, ensemble of 10 models, front view.
PDB entry 5ukz coloured by chain, ensemble of 10 models, side view.
PDB entry 5ukz coloured by chain, ensemble of 10 models, top view.
Source organism: Pediococcus acidilactici
Primary publication:
Synthesis, antimicrobial activity and conformational analysis of the class IIa bacteriocin pediocin PA-1 and analogs thereof.
Bédard F, Hammami R, Zirah S, Rebuffat S, Fliss I, Biron E
Sci Rep 8 9029 (2018)
PMID: 29899567

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-151467 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Bacteriocin pediocin PA-1 Chain: A
Molecule details ›
Chain: A
Length: 44 amino acids
Theoretical weight: 4.62 KDa
Source organism: Pediococcus acidilactici
Expression system: Not provided
UniProt:
  • Canonical: P29430 (Residues: 19-62; Coverage: 71%)
Gene names: pap, papA, pedA
Sequence domains: Class II bacteriocin

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: na
Expression system: Not provided

Quick links

Citations

5 review citations

The microbiome-shaping roles of bacteriocins.
Heilbronner et al. (2021)
4 more

5 mentions without citation

Probiotics-Derived Peptides and Their Immunomodulatory Molecules Can Play a Preventive Role Against Viral Diseases Including COVID-19.
Manna et al. (2021)
4 more