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Solution NMR structure of PHF20 PHD domain in complex with a histone H3K4me2 peptide

Solution NMR
PDB entry 5tbn coloured by chain, ensemble of 20 models, front view.
PDB entry 5tbn coloured by chain, ensemble of 20 models, side view.
PDB entry 5tbn coloured by chain, ensemble of 20 models, top view.
Source organism: Homo sapiens
Assembly composition:
hetero dimer (preferred)
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Histone H3.1 and PHD finger protein 20
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Multimeric state: hetero dimer
Accessible surface area: 5282.57 Å2
Buried surface area: 1013.42 Å2
Dissociation area: 456.33 Å2
Dissociation energy (ΔGdiss): 1.42 kcal/mol
Dissociation entropy (TΔSdiss): 7.66 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-159441

Macromolecules

PHD finger protein 20
Chain: A
Length: 57 amino acids
Theoretical weight: 6.83 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9BVI0 (Residues: 646-699; Coverage: 5%)
Gene names: C20orf104, GLEA2, HCA58, NZF, PHF20, TZP
Pfam: PhD finger domain
InterPro:
CATH: Zinc/RING finger domain, C3HC4 (zinc finger)
PHD finger protein 20 in PDB entry 5tbn, assembly 1, front view.
PHD finger protein 20 in PDB entry 5tbn, assembly 1, side view.
PHD finger protein 20 in PDB entry 5tbn, assembly 1, top view.
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Histone H3.1
Chain: C
Length: 12 amino acids
Theoretical weight: 1.28 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P68431 (Residues: 2-12; Coverage: 8%)
Gene names: H3C1, H3C10, H3C11, H3C12, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3FA, H3FB, H3FC HIST1H3C, H3FD, H3FF, H3FH, H3FI, H3FJ, H3FK, H3FL, HIST1H3A, HIST1H3B, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H3H, HIST1H3I, HIST1H3J
Histone H3.1 in PDB entry 5tbn, assembly 1, front view.
Histone H3.1 in PDB entry 5tbn, assembly 1, side view.
Histone H3.1 in PDB entry 5tbn, assembly 1, top view.
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