› 5swd

X-ray diffraction
2.5Å resolution

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195852 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain Chains: A, B
Molecule details ›
Chains: A, B
Length: 71 nucleotides
Theoretical weight: 22.69 KDa
Source organism: Vibrio vulnificus
Expression system: Not provided
Sequence domains: Purine riboswitch

Ligands and Environments

2 bound ligands:
Ligand ADE 1 x ADE
Ligand MG 3 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLAC LCLS BEAMLINE CXI
Spacegroup: P21
Unit cell:
a: 47.91Å b: 46.72Å c: 92.25Å
α: 90° β: 94.06° γ: 90°
R-values:
R R work R free
0.197 0.195 0.229
Expression system: Not provided

Quick links

Citations

25 review citations

RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Šponer et al. (2018)
24 more

5 mentions without citation

Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.
Stagno et al. (2017)
4 more