› 5ou7

X-ray diffraction
1.9Å resolution

Crystal structure of the Glycoprotein VI loop truncation mutant PAVS-PAPYKN

Released:
DOI: 10.2210/pdb5ou7/pdb
PDB 5ou7 coloured by chain and viewed from the front.
PDB 5ou7 coloured by chain and viewed from the side.
PDB 5ou7 coloured by chain and viewed from the top.
Source organism: Homo sapiens
Entry authors: Feitsma LJ, Huizinga EG

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Platelet glycoprotein VI Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 181 amino acids
Theoretical weight: 19.72 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q9HCN6 (Residues: 21-206; Coverage: 55%)
  • Best match: Q9HCN6-2 (Residues: 21-203)
Gene name: GP6
Sequence domains: Immunoglobulin domain
Structure domains: Immunoglobulins

Ligands and Environments

4 bound ligands:
Ligand CL 14 x CL
Ligand PO4 2 x PO4
Ligand PG6 2 x PG6
Ligand NAG 4 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P21
Unit cell:
a: 78.65Å b: 44.05Å c: 117.66Å
α: 90° β: 104.69° γ: 90°
R-values:
R R work R free
0.223 0.221 0.26
Expression system: Homo sapiens

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