› 5odn

X-ray diffraction
2.6Å resolution

Salinibacter ruber Single-Strand Binding protein

Released:
DOI: 10.2210/pdb5odn/pdb
PDB entry 5odn coloured by chain, front view.
PDB entry 5odn coloured by chain, side view.
PDB entry 5odn coloured by chain, top view.
Source organisms:
Entry authors: Pierechod M, Rothweiler U

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero hexadecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-119096 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
Single-stranded DNA-binding protein Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 196 amino acids
Theoretical weight: 21.9 KDa
Source organism: Salinibacter ruber DSM 13855
Expression system: Escherichia coli
UniProt:
  • Canonical: Q2S565 (Residues: 1-168; Coverage: 100%)
Gene names: SRU_0523, ssb
Sequence domains: Single-strand binding protein family
Structure domains: Nucleic acid-binding proteins
DNA (5'-D(P*TP*TP*TP*T)-3') Chains: I, J, K, M, N, Q
Molecule details ›
Chains: I, J, K, M, N, Q
Length: 4 nucleotides
Theoretical weight: 1.17 KDa
Source organism: Salinibacter ruber
Expression system: Not provided
DNA (5'-D(*TP*TP*T)-3') Chains: L, P
Molecule details ›
Chains: L, P
Length: 3 nucleotides
Theoretical weight: 868 Da
Source organism: Salinibacter ruber
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.1
Spacegroup: C2221
Unit cell:
a: 106.47Å b: 123.5Å c: 205.25Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.192 0.19 0.243
Expression systems:
  • Escherichia coli
  • Not provided

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