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Crystal structure of Gentamicin bound to the yeast 80S ribosome

X-ray diffraction
3.4Å resolution
PDB entry 5obm coloured by chain, front view.
PDB entry 5obm coloured by chain, side view.
PDB entry 5obm coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Assemblies composition:
hetero 79-mer
hetero 82-mer (preferred)
Entry contents: 79 distinct polypeptide molecules
4 distinct RNA molecules

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Assemblies

Assembly 1
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Assembly Name: 40S cytosolic small ribosomal subunit and RNA
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Multimeric state: hetero 79-mer
PDBe Complex ID: PDB-CPX-126822
Assembly 2 (preferred)
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Assembly Name: 40S cytosolic small ribosomal subunit and RNA
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Multimeric state: hetero 82-mer
PDBe Complex ID: PDB-CPX-219101

Macromolecules

Large ribosomal subunit protein uL2A
Chains: L2, l2
Length: 252 amino acids
Theoretical weight: 27.22 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX45 (Residues: 2-253; Coverage: 99%)
Gene names: RPL2A, RPL5B, YFR031BC, YFR031C-A
Pfam:
InterPro:
Large ribosomal subunit protein uL2A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL2A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL2A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL3
Chains: L3, l3
Length: 386 amino acids
Theoretical weight: 43.72 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P14126 (Residues: 2-387; Coverage: 100%)
Gene names: MAK8, RPL3, TCM1, YOR063W, YOR29-14
Pfam: Ribosomal protein L3
InterPro:
Large ribosomal subunit protein uL3 in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL3 in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL3 in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL4A
Chains: L4, l4
Length: 361 amino acids
Theoretical weight: 39.03 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P10664 (Residues: 2-362; Coverage: 100%)
Gene names: RPL2, RPL2A, RPL4A, YBR0315, YBR031W
Pfam:
InterPro:
Large ribosomal subunit protein uL4A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL4A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL4A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL18
Chains: L5, l5
Length: 296 amino acids
Theoretical weight: 33.63 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P26321 (Residues: 2-297; Coverage: 100%)
Gene names: LPI14W, RPL1, RPL1A, RPL5, YPL131W
Pfam:
InterPro:
Large ribosomal subunit protein uL18 in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL18 in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL18 in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL6A
Chains: L6, l6
Length: 176 amino acids
Theoretical weight: 20 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q02326 (Residues: 1-176; Coverage: 100%)
Gene names: RPL17A, RPL6A, YL16A, YML073C
Pfam: Ribosomal protein L6e
InterPro:
Large ribosomal subunit protein eL6A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL6A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL6A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL30A
Chains: L7, l7
Length: 223 amino acids
Theoretical weight: 25.34 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05737 (Residues: 22-244; Coverage: 91%)
Gene names: RPL6A, RPL7A, RPL8A, YGL076C, YL8A
Pfam:
InterPro:
Large ribosomal subunit protein uL30A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL30A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL30A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL8A
Chains: L8, l8
Length: 233 amino acids
Theoretical weight: 25.81 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P17076 (Residues: 24-256; Coverage: 91%)
Gene names: MAK7, RPL4A, RPL8A, YHL033C
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Large ribosomal subunit protein eL8A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL8A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL8A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL6A
Chains: L9, l9
Length: 191 amino acids
Theoretical weight: 21.61 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05738 (Residues: 1-191; Coverage: 100%)
Gene names: RPL8A, RPL9, RPL9A, YGL147C
Pfam: Ribosomal protein L6
InterPro:
Large ribosomal subunit protein uL6A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL6A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL6A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL16
Chains: M0, m0
Length: 221 amino acids
Theoretical weight: 25.41 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P41805 (Residues: 1-221; Coverage: 100%)
Gene names: GRC5, QSR1, RPL10, YLR075W
Pfam: Ribosomal protein L16p/L10e
InterPro:
Large ribosomal subunit protein uL16 in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL16 in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL16 in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL5B
Chains: M1, m1
Length: 169 amino acids
Theoretical weight: 19.27 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q3E757 (Residues: 6-174; Coverage: 97%)
Gene names: RP39B, RPL11B, RPL16B, YGR085C
Pfam:
InterPro:
Large ribosomal subunit protein uL5B in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL5B in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL5B in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL13A
Chains: M3, m3
Length: 194 amino acids
Theoretical weight: 21.96 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q12690 (Residues: 2-195; Coverage: 98%)
Gene names: RPL13A, YDL082W
Pfam: Ribosomal protein L13e
InterPro:
Large ribosomal subunit protein eL13A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL13A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL13A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL14A
Chains: M4, m4
Length: 137 amino acids
Theoretical weight: 15.06 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P36105 (Residues: 2-138; Coverage: 99%)
Gene names: RPL14A, YKL006W, YKL153
Pfam:
InterPro:
Large ribosomal subunit protein eL14A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL14A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL14A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL15A
Chains: M5, m5
Length: 203 amino acids
Theoretical weight: 24.35 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05748 (Residues: 2-204; Coverage: 100%)
Gene names: RPL10A, RPL13A, RPL15A, YL10A, YLR029C
Pfam: Ribosomal L15
InterPro:
Large ribosomal subunit protein eL15A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL15A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL15A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL13A
Chains: M6, m6
Length: 197 amino acids
Theoretical weight: 22.03 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P26784 (Residues: 3-199; Coverage: 99%)
Gene names: RPL13, RPL16A, RPL21A, YIL133C
Pfam: Ribosomal protein L13
InterPro:
Large ribosomal subunit protein uL13A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL13A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL13A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL22A
Chains: M7, m7
Length: 184 amino acids
Theoretical weight: 20.59 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05740 (Residues: 1-184; Coverage: 100%)
Gene names: RPL17, RPL17A, RPL20A, YKL180W
Pfam: Ribosomal protein L22p/L17e
InterPro:
Large ribosomal subunit protein uL22A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL22A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL22A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL18A
Chains: M8, m8
Length: 185 amino acids
Theoretical weight: 20.48 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX49 (Residues: 2-186; Coverage: 100%)
Gene names: RP28A, RPL18A, YOL120C
Pfam: Ribosomal protein 60S L18 and 50S L18e
InterPro:
Large ribosomal subunit protein eL18A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL18A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL18A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL19A
Chains: M9, m9
Length: 188 amino acids
Theoretical weight: 21.63 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX82 (Residues: 2-189; Coverage: 100%)
Gene names: RPL19A, RPL23A, YBR084BC, YBR084C-A, YL14A
Pfam: Ribosomal protein L19e
InterPro:
Large ribosomal subunit protein eL19A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL19A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL19A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL20A
Chains: N0, n0
Length: 172 amino acids
Theoretical weight: 20.48 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX23 (Residues: 1-172; Coverage: 100%)
Gene names: RPL18A, RPL18A2, RPL20A, YM9408.04C, YMR242C
Pfam: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
InterPro:
Large ribosomal subunit protein eL20A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL20A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL20A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL21A
Chains: N1, n1
Length: 159 amino acids
Theoretical weight: 18.15 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q02753 (Residues: 2-160; Coverage: 99%)
Gene names: RPL21A, URP1, YBR1401, YBR191W
Pfam: Ribosomal protein L21e
InterPro:
Large ribosomal subunit protein eL21A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL21A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL21A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL22A
Chains: N2, n2
Length: 100 amino acids
Theoretical weight: 11.26 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05749 (Residues: 9-108; Coverage: 83%)
Gene names: L2168, RPL22A, YLR061W
Pfam: Ribosomal L22e protein family
InterPro:
Large ribosomal subunit protein eL22A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL22A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL22A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL14A
Chains: N3, n3
Length: 136 amino acids
Theoretical weight: 14.36 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX41 (Residues: 2-137; Coverage: 99%)
Gene names: RPL17A, RPL17AA, RPL23A, YBL0713, YBL087C
Pfam: Ribosomal protein L14p/L23e
InterPro:
Large ribosomal subunit protein uL14A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL14A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL14A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL24A
Chain: N4
Length: 155 amino acids
Theoretical weight: 17.66 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P04449 (Residues: 1-155; Coverage: 100%)
Gene names: RP29, RPL24A, RPL30A, YGL031C
Pfam: Ribosomal protein L24e
InterPro:
Large ribosomal subunit protein eL24A in PDB entry 5obm, assembly 1, front view.
Large ribosomal subunit protein eL24A in PDB entry 5obm, assembly 1, side view.
Large ribosomal subunit protein eL24A in PDB entry 5obm, assembly 1, top view.
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Large ribosomal subunit protein uL23
Chains: N5, n5
Length: 121 amino acids
Theoretical weight: 13.77 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P04456 (Residues: 22-142; Coverage: 85%)
Gene names: RPL25, YOL127W
Pfam:
InterPro:
Large ribosomal subunit protein uL23 in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL23 in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL23 in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL24A
Chains: N6, n6
Length: 126 amino acids
Theoretical weight: 14.13 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05743 (Residues: 2-127; Coverage: 99%)
Gene names: L8300.4, RPL26, RPL26A, RPL33A, YLR344W
Pfam:
InterPro:
Large ribosomal subunit protein uL24A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL24A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL24A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL27A
Chains: N7, n7
Length: 135 amino acids
Theoretical weight: 15.44 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0C2H6 (Residues: 2-136; Coverage: 99%)
Gene names: RPL27, RPL27A, YHR010W
Pfam: Ribosomal L27e protein family
InterPro:
Large ribosomal subunit protein eL27A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL27A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL27A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL15
Chains: N8, n8
Length: 148 amino acids
Theoretical weight: 16.63 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P02406 (Residues: 2-149; Coverage: 99%)
Gene names: CYH2, RPL28, YGL103W
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Large ribosomal subunit protein uL15 in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL15 in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL15 in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL29
Chains: N9, n9
Length: 58 amino acids
Theoretical weight: 6.56 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05747 (Residues: 2-59; Coverage: 98%)
Gene names: RPL29, YFR032BW, YFR032C-A, YL43
Pfam: Ribosomal L29e protein family
InterPro: Large ribosomal subunit protein eL29
Large ribosomal subunit protein eL29 in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL29 in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL29 in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL30
Chains: O0, o0
Length: 100 amino acids
Theoretical weight: 10.9 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P14120 (Residues: 6-105; Coverage: 95%)
Gene names: RPL30, RPL32, YGL030W
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Large ribosomal subunit protein eL30 in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL30 in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL30 in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL31A
Chains: O1, o1
Length: 109 amino acids
Theoretical weight: 12.65 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0C2H8 (Residues: 4-112; Coverage: 97%)
Gene names: D2478, RPL31A, RPL34, RPL34A, YDL075W
Pfam: Ribosomal protein L31e
InterPro:
Large ribosomal subunit protein eL31A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL31A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL31A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL32
Chains: O2, o2
Length: 127 amino acids
Theoretical weight: 14.48 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P38061 (Residues: 2-128; Coverage: 98%)
Gene names: RPL32, YBL0838, YBL092W
Pfam: Ribosomal protein L32
InterPro:
Large ribosomal subunit protein eL32 in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL32 in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL32 in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL33A
Chains: O3, o3
Length: 106 amino acids
Theoretical weight: 12.05 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05744 (Residues: 2-107; Coverage: 99%)
Gene names: LPI4W, P2625, RPL33A, RPL37A, YPL143W
Pfam: Ribosomal protein L35Ae
InterPro:
Large ribosomal subunit protein eL33A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL33A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL33A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL34A
Chains: O4, o4
Length: 112 amino acids
Theoretical weight: 12.61 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P87262 (Residues: 2-113; Coverage: 93%)
Gene names: RPL34A, YER056BC, YER056C-A
Pfam: Ribosomal protein L34e
InterPro:
Large ribosomal subunit protein eL34A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL34A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL34A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL29A
Chains: O5, o5
Length: 119 amino acids
Theoretical weight: 13.81 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX84 (Residues: 2-120; Coverage: 99%)
Gene names: D1249, RPL35A, SOS1, YDL191W
Pfam: Ribosomal L29 protein
InterPro:
Large ribosomal subunit protein uL29A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL29A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL29A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL36A
Chains: O6, o6
Length: 99 amino acids
Theoretical weight: 11.02 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05745 (Residues: 2-100; Coverage: 99%)
Gene names: RPL36A, RPL39A, YM9646.06, YMR194W
Pfam: Ribosomal protein L36e
InterPro:
Large ribosomal subunit protein eL36A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL36A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL36A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL37A
Chains: O7, o7
Length: 87 amino acids
Theoretical weight: 9.75 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P49166 (Residues: 2-88; Coverage: 99%)
Gene names: L9470.6, RPL35A, RPL37A, YLR185W
Pfam: Ribosomal protein L37e
InterPro:
Large ribosomal subunit protein eL37A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL37A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL37A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL38
Chains: O8, o8
Length: 77 amino acids
Theoretical weight: 8.71 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P49167 (Residues: 2-78; Coverage: 99%)
Gene names: L8543.2, RPL38, YLR325C
Pfam: Ribosomal L38e protein family
InterPro:
Large ribosomal subunit protein eL38 in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL38 in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL38 in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL39
Chains: O9, o9
Length: 50 amino acids
Theoretical weight: 6.23 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P04650 (Residues: 2-51; Coverage: 98%)
Gene names: J0360, RPL39, RPL46, SPB2, YJL189W
Pfam: Ribosomal L39 protein
InterPro:
Large ribosomal subunit protein eL39 in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL39 in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL39 in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL40A
Chains: Q0, q0
Length: 52 amino acids
Theoretical weight: 6.03 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CH08 (Residues: 77-128; Coverage: 41%)
Gene names: RPL40A, UBI1, YIL148W
Pfam: Ribosomal L40e family
InterPro:
Large ribosomal subunit protein eL40A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL40A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL40A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS32A
Chains: Q1, q1
Length: 25 amino acids
Theoretical weight: 3.35 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX86 (Residues: 1-25; Coverage: 100%)
Gene names: D1290, RPL41A, RPL47A, YDL184C, YL41A
Pfam: Ribosomal protein L41
InterPro: Large ribosomal subunit protein eS32
Large ribosomal subunit protein eL41A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL41A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL41A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL42A
Chains: Q2, q2
Length: 105 amino acids
Theoretical weight: 12.12 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX27 (Residues: 2-106; Coverage: 99%)
Gene names: N1722, RPL41A, RPL42A, SCL41A, YNL162W
Pfam: Ribosomal protein L44
InterPro:
Large ribosomal subunit protein eL42A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL42A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL42A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL43A
Chains: Q3, q3
Length: 91 amino acids
Theoretical weight: 9.98 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX25 (Residues: 2-92; Coverage: 99%)
Gene names: RPL43A, YP9499.02, YPR043W
Pfam: Ribosomal L37ae protein family
InterPro:
Large ribosomal subunit protein eL43A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL43A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL43A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS2A
Chains: S0, s0
Length: 206 amino acids
Theoretical weight: 22.81 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P32905 (Residues: 2-207; Coverage: 82%)
Gene names: NAB1, NAB1A, RPS0A, YGR214W, YST1
Pfam: Ribosomal protein S2
InterPro:
Small ribosomal subunit protein uS2A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS2A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS2A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS1A
Chains: S1, s1
Length: 216 amino acids
Theoretical weight: 24.5 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P33442 (Residues: 20-235; Coverage: 85%)
Gene names: L9753.9, PLC1, RPS10A, RPS1A, YLR441C
Pfam: Ribosomal S3Ae family
InterPro:
Small ribosomal subunit protein eS1A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS1A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS1A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS5
Chains: S2, s2
Length: 217 amino acids
Theoretical weight: 23.21 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P25443 (Residues: 34-250; Coverage: 85%)
Gene names: G2893, RPS2, RPS4, SUP38, SUP44, YGL123W
Pfam:
InterPro:
Small ribosomal subunit protein uS5 in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS5 in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS5 in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS3
Chains: S3, s3
Length: 223 amino acids
Theoretical weight: 24.7 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05750 (Residues: 3-225; Coverage: 93%)
Gene names: N1653, RPS3, SUF14, YNL178W
Pfam:
InterPro:
Small ribosomal subunit protein uS3 in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS3 in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS3 in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS4A
Chains: S4, s4
Length: 260 amino acids
Theoretical weight: 29.34 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX35 (Residues: 2-261; Coverage: 100%)
Gene names: J2186, RPS4A, RPS7B, YJR145C
Pfam:
InterPro:
Small ribosomal subunit protein eS4A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS4A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS4A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS7
Chains: S5, s5
Length: 206 amino acids
Theoretical weight: 22.91 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P26783 (Residues: 20-225; Coverage: 92%)
Gene names: J2045, RPS2, RPS5, YJR123W
Pfam: Ribosomal protein S7p/S5e
InterPro:
Small ribosomal subunit protein uS7 in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS7 in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS7 in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS6A
Chains: S6, s6
Length: 236 amino acids
Theoretical weight: 27.05 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX37 (Residues: 1-236; Coverage: 100%)
Gene names: LPG18C, RPS101, RPS10B, RPS6A, YPL090C
Pfam: Ribosomal protein S6e
InterPro:
Small ribosomal subunit protein eS6A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS6A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS6A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS7A
Chains: S7, s7
Length: 186 amino acids
Theoretical weight: 21.16 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P26786 (Residues: 2-187; Coverage: 98%)
Gene names: RPS30, RPS7A, YOR096W, YOR3177W
Pfam: Ribosomal protein S7e
InterPro:
Small ribosomal subunit protein eS7A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS7A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS7A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS8A
Chains: S8, s8
Length: 200 amino acids
Theoretical weight: 22.54 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX39 (Residues: 1-200; Coverage: 100%)
Gene names: RPS14A, RPS8A, YBL06.05, YBL0613, YBL072C
Pfam: Ribosomal protein S8e
InterPro:
Small ribosomal subunit protein eS8A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS8A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS8A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS4A
Chains: S9, s9
Length: 185 amino acids
Theoretical weight: 21.21 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: O13516 (Residues: 2-186; Coverage: 94%)
Gene names: RPS13A, RPS9A, YPL081W, YS11A
Pfam:
InterPro:
Small ribosomal subunit protein uS4A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS4A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS4A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS10A
Chains: C0, c0
Length: 105 amino acids
Theoretical weight: 12.76 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q08745 (Residues: 1-105; Coverage: 100%)
Gene names: RPS10A, YOR293W
Pfam: Plectin/S10 domain
InterPro:
Small ribosomal subunit protein eS10A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS10A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS10A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS17A
Chains: C1, c1
Length: 156 amino acids
Theoretical weight: 17.79 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX47 (Residues: 1-156; Coverage: 100%)
Gene names: RPS11A, RPS18A, YD9813.03, YDR025W
Pfam:
InterPro:
Small ribosomal subunit protein uS17A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS17A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS17A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS12
Chains: C2, c2
Length: 143 amino acids
Theoretical weight: 15.49 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P48589 (Residues: 1-143; Coverage: 100%)
Gene names: RPS12, YOR369C
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Small ribosomal subunit protein eS12 in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS12 in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS12 in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS15
Chains: C3, c3
Length: 150 amino acids
Theoretical weight: 16.93 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05756 (Residues: 2-151; Coverage: 99%)
Gene names: D4252, RPS13, RPS13C, YD9609.18, YDR064W
Pfam:
InterPro:
Small ribosomal subunit protein uS15 in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS15 in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS15 in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS11B
Chains: C4, c4
Length: 128 amino acids
Theoretical weight: 13.56 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P39516 (Residues: 11-138; Coverage: 93%)
Gene names: CRY2, J0354, RPS14B, YJL191W
Pfam: Ribosomal protein S11
InterPro:
Small ribosomal subunit protein uS11B in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS11B in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS11B in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS19
Chains: C5, c5
Length: 141 amino acids
Theoretical weight: 15.9 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q01855 (Residues: 2-142; Coverage: 99%)
Gene names: RPS15, RPS21, YOL040C
Pfam: Ribosomal protein S19
InterPro:
Small ribosomal subunit protein uS19 in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS19 in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS19 in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS9A
Chains: C6, c6
Length: 142 amino acids
Theoretical weight: 15.75 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX51 (Residues: 2-143; Coverage: 99%)
Gene names: RP61R, RPS16A, YM9375.12, YMR143W
Pfam: Ribosomal protein S9/S16
InterPro:
Small ribosomal subunit protein uS9A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS9A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS9A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS17A
Chains: C7, c7
Length: 136 amino acids
Theoretical weight: 15.82 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P02407 (Residues: 1-136; Coverage: 100%)
Gene names: RP51A, RPS17A, YML024W
Pfam: Ribosomal S17
InterPro:
Small ribosomal subunit protein eS17A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS17A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS17A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS13A
Chains: C8, c8
Length: 145 amino acids
Theoretical weight: 16.94 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX55 (Residues: 2-146; Coverage: 99%)
Gene names: D9461.35, RPS18A, YDR450W
Pfam: Ribosomal protein S13/S18
InterPro:
Small ribosomal subunit protein uS13A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS13A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS13A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS19A
Chains: C9, c9
Length: 143 amino acids
Theoretical weight: 15.81 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P07280 (Residues: 2-144; Coverage: 99%)
Gene names: RP55A, RPS16AA, RPS19A, YOL121C
Pfam: Ribosomal protein S19e
InterPro:
Small ribosomal subunit protein eS19A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS19A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS19A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS10
Chains: D0, d0
Length: 110 amino acids
Theoretical weight: 12.58 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P38701 (Residues: 12-121; Coverage: 91%)
Gene names: RPS20, URP2, YHL015W
Pfam: Ribosomal protein S10p/S20e
InterPro:
Small ribosomal subunit protein uS10 in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS10 in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS10 in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS21A
Chains: D1, d1
Length: 87 amino acids
Theoretical weight: 9.76 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0C0V8 (Residues: 1-87; Coverage: 100%)
Gene names: RPS21A, RPS25, RPS25A, RPS26A, YKR057W
Pfam: Ribosomal protein S21e
InterPro:
Small ribosomal subunit protein eS21A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS21A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS21A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS8A
Chains: D2, d2
Length: 129 amino acids
Theoretical weight: 14.52 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0C0W1 (Residues: 2-130; Coverage: 99%)
Gene names: J0355, RPS22A, RPS24, RPS24A, YJL190C
Pfam: Ribosomal protein S8
InterPro:
Small ribosomal subunit protein uS8A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS8A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS8A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS12A
Chains: D3, d3
Length: 144 amino acids
Theoretical weight: 15.94 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX29 (Residues: 2-145; Coverage: 99%)
Gene names: G6178, RPS23A, RPS28A, YGR118W
Pfam: Ribosomal protein S12/S23
InterPro:
Small ribosomal subunit protein uS12A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS12A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS12A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS24A
Chains: D4, d4
Length: 134 amino acids
Theoretical weight: 15.23 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX31 (Residues: 2-135; Coverage: 99%)
Gene names: RPS24A, RPS24EA, YER074W
Pfam: Ribosomal protein S24e
InterPro:
Small ribosomal subunit protein eS24A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS24A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS24A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS25A
Chains: D5, d5
Length: 70 amino acids
Theoretical weight: 8 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q3E792 (Residues: 36-105; Coverage: 65%)
Gene names: RPS25A, RPS31A, YGR027C
Pfam: S25 ribosomal protein
InterPro:
Small ribosomal subunit protein eS25A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS25A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS25A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS26B
Chains: D6, d6
Length: 97 amino acids
Theoretical weight: 11.02 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P39939 (Residues: 2-98; Coverage: 82%)
Gene names: RPS26B, YER131W
Pfam: Ribosomal protein S26e
InterPro:
Small ribosomal subunit protein eS26B in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS26B in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS26B in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS27A
Chains: D7, d7
Length: 81 amino acids
Theoretical weight: 8.76 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P35997 (Residues: 2-82; Coverage: 99%)
Gene names: RPS27A, YKL156W
Pfam: Ribosomal protein S27
InterPro:
Small ribosomal subunit protein eS27A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS27A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS27A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS28A
Chains: D8, d8
Length: 63 amino acids
Theoretical weight: 7.12 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q3E7X9 (Residues: 5-67; Coverage: 94%)
Gene names: O3600, RPS28A, RPS33, RPS33A, YOR167C
Pfam: Ribosomal protein S28e
InterPro:
Small ribosomal subunit protein eS28A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS28A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS28A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein uS14A
Chains: D9, d9
Length: 53 amino acids
Theoretical weight: 6.34 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P41057 (Residues: 4-56; Coverage: 95%)
Gene names: L8084.11, RPS29A, RPS36A, YLR388W, YS29A
Pfam: Ribosomal protein S14p/S29e
InterPro:
Small ribosomal subunit protein uS14A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein uS14A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein uS14A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS30A
Chains: E0, e0
Length: 62 amino acids
Theoretical weight: 7.01 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P0CX33 (Residues: 2-63; Coverage: 98%)
Gene names: L8003.23, RPS30A, YLR287BC, YLR287C-A
Pfam: Ribosomal protein S30
InterPro: Small ribosomal subunit protein eS30
Small ribosomal subunit protein eS30A in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS30A in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS30A in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein eS31
Chains: E1, e1
Length: 72 amino acids
Theoretical weight: 8.23 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05759 (Residues: 81-152; Coverage: 47%)
Gene names: L9470.14, RPS31, RPS37, UBI3, YLR167W
Pfam: Ribosomal protein S27a
InterPro:
Small ribosomal subunit protein eS31 in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein eS31 in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein eS31 in PDB entry 5obm, assembly 2, top view.
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Small ribosomal subunit protein RACK1
Chains: SR, sR
Length: 318 amino acids
Theoretical weight: 34.65 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P38011 (Residues: 2-319; Coverage: 100%)
Gene names: ASC1, CPC2, YM9718.15C, YMR116C
Pfam: WD domain, G-beta repeat
InterPro:
Small ribosomal subunit protein RACK1 in PDB entry 5obm, assembly 2, front view.
Small ribosomal subunit protein RACK1 in PDB entry 5obm, assembly 2, side view.
Small ribosomal subunit protein RACK1 in PDB entry 5obm, assembly 2, top view.
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Suppressor protein STM1
Chains: SM, sM
Length: 272 amino acids
Theoretical weight: 29.92 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P39015 (Residues: 2-273; Coverage: 100%)
Gene names: L9634.1, MPT4, STM1, STO1, YLR150W
Pfam: Stm1
InterPro:
Suppressor protein STM1 in PDB entry 5obm, assembly 2, front view.
Suppressor protein STM1 in PDB entry 5obm, assembly 2, side view.
Suppressor protein STM1 in PDB entry 5obm, assembly 2, top view.
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60S ribosomal protein L12
Chain: m2
Length: 165 amino acids
Theoretical weight: 14.06 KDa
Source organism: Saccharomyces cerevisiae S288C
60S ribosomal protein L12 in PDB entry 5obm, assembly 2, front view.
60S ribosomal protein L12 in PDB entry 5obm, assembly 2, side view.
60S ribosomal protein L12 in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein eL24A
Chain: n4
Length: 135 amino acids
Theoretical weight: 15.51 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P04449 (Residues: 1-135; Coverage: 87%)
Gene names: RP29, RPL24A, RPL30A, YGL031C
Pfam: Ribosomal protein L24e
InterPro:
Large ribosomal subunit protein eL24A in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein eL24A in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein eL24A in PDB entry 5obm, assembly 2, top view.
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Large ribosomal subunit protein uL10
Chain: p0
Length: 312 amino acids
Theoretical weight: 33.75 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P05317 (Residues: 1-312; Coverage: 100%)
Gene names: L10E, L8300.8, RPA0, RPL10E, RPLA0, RPP0, YLR340W
Pfam:
InterPro:
Large ribosomal subunit protein uL10 in PDB entry 5obm, assembly 2, front view.
Large ribosomal subunit protein uL10 in PDB entry 5obm, assembly 2, side view.
Large ribosomal subunit protein uL10 in PDB entry 5obm, assembly 2, top view.
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Ribosomal protein P1 alpha
Chain: p1
Length: 47 amino acids
Theoretical weight: 4.02 KDa
Source organism: Saccharomyces cerevisiae S288C
Ribosomal protein P1 alpha in PDB entry 5obm, assembly 2, front view.
Ribosomal protein P1 alpha in PDB entry 5obm, assembly 2, side view.
Ribosomal protein P1 alpha in PDB entry 5obm, assembly 2, top view.
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RNA chains 1, 5
Name: 25S ribosomal RNA
Representative chains: 1, 5
Length: 3396 nucleotides
Theoretical weight: 1097.49 KDa
Rfam: Eukaryotic large subunit ribosomal RNA
25S ribosomal RNA in PDB entry 5obm, assembly 2, front view.
25S ribosomal RNA in PDB entry 5obm, assembly 2, side view.
25S ribosomal RNA in PDB entry 5obm, assembly 2, top view.
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RNA chains 3, 7
Name: 5S ribosomal RNA
Representative chains: 3, 7
Length: 121 nucleotides
Theoretical weight: 38.95 KDa
Rfam: 5S ribosomal RNA
5S ribosomal RNA in PDB entry 5obm, assembly 2, front view.
5S ribosomal RNA in PDB entry 5obm, assembly 2, side view.
5S ribosomal RNA in PDB entry 5obm, assembly 2, top view.
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RNA chains 4, 8
Name: 5.8S ribosomal RNA
Representative chains: 4, 8
Length: 158 nucleotides
Theoretical weight: 50.68 KDa
Rfam: 5.8S ribosomal RNA
5.8S ribosomal RNA in PDB entry 5obm, assembly 2, front view.
5.8S ribosomal RNA in PDB entry 5obm, assembly 2, side view.
5.8S ribosomal RNA in PDB entry 5obm, assembly 2, top view.
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RNA chains 2, 6
Name: 18S Ribosomal RNA
Representative chains: 2, 6
Length: 1800 nucleotides
Theoretical weight: 579.76 KDa
Rfam: Eukaryotic small subunit ribosomal RNA
18S Ribosomal RNA in PDB entry 5obm, assembly 2, front view.
18S Ribosomal RNA in PDB entry 5obm, assembly 2, side view.
18S Ribosomal RNA in PDB entry 5obm, assembly 2, top view.
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