› 5mth

X-ray diffraction
1.73Å resolution

Structure of DC8E8 Fab at pH 6.5 crystallized in spacegroup P21

Released:
DOI: 10.2210/pdb5mth/pdb
PDB 5mth coloured by chain and viewed from the front.
PDB 5mth coloured by chain and viewed from the side.
PDB 5mth coloured by chain and viewed from the top.
Source organism: Mus musculus
Entry authors: Skrabana R, Novak M, Cehlar O, Kontsekova E

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
antibody Fab heavy chain Chains: A, H
Molecule details ›
Chains: A, H
Length: 221 amino acids
Theoretical weight: 23.8 KDa
Source organism: Mus musculus
Structure domains: Immunoglobulins
antibody Fab light chain Chains: B, L
Molecule details ›
Chains: B, L
Length: 219 amino acids
Theoretical weight: 24.28 KDa
Source organism: Mus musculus
Structure domains: Immunoglobulins

Ligands and Environments

Carbohydrate polymer : NEW Components: GLC
Carbohydrate polymer
1 bound ligand:
Ligand ACT 5 x ACT
1 modified residue:
Ligand PCA 2 x PCA

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P21
Unit cell:
a: 41.45Å b: 111.77Å c: 95.64Å
α: 90° β: 90.56° γ: 90°
R-values:
R R work R free
0.188 0.185 0.236

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