Reviews - 5mpc mentioned but not cited (1)
- Functional Differences between Proteasome Subtypes. Abi Habib J, Lesenfants J, Vigneron N, Van den Eynde BJ. Cells 11 421 (2022)
Articles - 5mpc mentioned but not cited (5)
- Structural insights into the functional cycle of the ATPase module of the 26S proteasome. Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Förster F, Schulten K, Baumeister W, Sakata E. Proc Natl Acad Sci U S A 114 1305-1310 (2017)
- In Situ Structure of Neuronal C9orf72 Poly-GA Aggregates Reveals Proteasome Recruitment. Guo Q, Lehmer C, Martínez-Sánchez A, Rudack T, Beck F, Hartmann H, Pérez-Berlanga M, Frottin F, Hipp MS, Hartl FU, Edbauer D, Baumeister W, Fernández-Busnadiego R. Cell 172 696-705.e12 (2018)
- Substrate-engaged 26S proteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation. de la Peña AH, Goodall EA, Gates SN, Lander GC, Martin A. Science 362 (2018)
- A novel recognition site for polyubiquitin and ubiquitin-like signals in an unexpected region of proteasomal subunit Rpn1. Boughton AJ, Liu L, Lavy T, Kleifeld O, Fushman D. J Biol Chem 297 101052 (2021)
- Enabling Photoactivated Cross-Linking Mass Spectrometric Analysis of Protein Complexes by Novel MS-Cleavable Cross-Linkers. Gutierrez C, Salituro LJ, Yu C, Wang X, DePeter SF, Rychnovsky SD, Huang L. Mol Cell Proteomics 20 100084 (2021)
Reviews citing this publication (28)
- The Logic of the 26S Proteasome. Collins GA, Goldberg AL. Cell 169 792-806 (2017)
- Proteasome Structure and Assembly. Budenholzer L, Cheng CL, Li Y, Hochstrasser M. J. Mol. Biol. 429 3500-3524 (2017)
- Meddling with Fate: The Proteasomal Deubiquitinating Enzymes. de Poot SAH, Tian G, Finley D. J. Mol. Biol. 429 3525-3545 (2017)
- Mechanisms of substrate recognition by the 26S proteasome. Davis C, Spaller BL, Matouschek A. Curr Opin Struct Biol 67 161-169 (2021)
- Structure and Function of the 26S Proteasome. Bard JAM, Goodall EA, Greene ER, Jonsson E, Dong KC, Martin A. Annu. Rev. Biochem. 87 697-724 (2018)
- Structure, Dynamics and Function of the 26S Proteasome. Mao Y. Subcell Biochem 96 1-151 (2021)
- Proteasome interaction with ubiquitinated substrates: from mechanisms to therapies. Chen X, Htet ZM, López-Alfonzo E, Martin A, Walters KJ. FEBS J 288 5231-5251 (2021)
- Proteasome in action: substrate degradation by the 26S proteasome. Sahu I, Glickman MH. Biochem Soc Trans 49 629-644 (2021)
- Substrate selection by the proteasome through initiation regions. Tomita T, Matouschek A. Protein Sci 28 1222-1232 (2019)
- A Practical Review of Proteasome Pharmacology. Thibaudeau TA, Smith DM. Pharmacol. Rev. 71 170-197 (2019)
- Biological and Pathological Implications of an Alternative ATP-Powered Proteasomal Assembly With Cdc48 and the 20S Peptidase. Esaki M, Johjima-Murata A, Islam MT, Ogura T. Front Mol Biosci 5 56 (2018)
- Understanding the 26S proteasome molecular machine from a structural and conformational dynamics perspective. Greene ER, Dong KC, Martin A. Curr Opin Struct Biol 61 33-41 (2020)
- Frozen in time: analyzing molecular dynamics with time-resolved cryo-EM. Amann SJ, Keihsler D, Bodrug T, Brown NG, Haselbach D. Structure 31 4-19 (2023)
- Mechanisms of cell regulation - proteolysis, the big surprise. Wolf DH, Menssen R. FEBS Lett. 592 2515-2524 (2018)
- The Cryo-EM Effect: Structural Biology of Neurodegenerative Disease Proteostasis Factors. Creekmore BC, Chang YW, Lee EB. J Neuropathol Exp Neurol 80 494-513 (2021)
- AAA+ ATPases in Protein Degradation: Structures, Functions and Mechanisms. Zhang S, Mao Y. Biomolecules 10 (2020)
- Bortezomib advanced mechanisms of action in multiple myeloma, solid and liquid tumors along with its novel therapeutic applications. Alwahsh M, Farhat J, Talhouni S, Hamadneh L, Hergenröder R. EXCLI J 22 146-168 (2023)
- Chaperone-mediated assembly of the proteasome core particle - recent developments and structural insights. Schnell HM, Walsh RM, Rawson S, Hanna J. J Cell Sci 135 jcs259622 (2022)
- Dynamic Regulation of the 26S Proteasome: From Synthesis to Degradation. Marshall RS, Vierstra RD. Front Mol Biosci 6 40 (2019)
- How the 26S Proteasome Degrades Ubiquitinated Proteins in the Cell. Coll-Martínez B, Crosas B. Biomolecules 9 (2019)
- Natural Agents as Novel Potential Source of Proteasome Inhibitors with Anti-Tumor Activity: Focus on Multiple Myeloma. Ambrosio FA, Costa G, Gallo Cantafio ME, Torcasio R, Trapasso F, Alcaro S, Viglietto G, Amodio N. Molecules 28 1438 (2023)
- Proteasome Activation to Combat Proteotoxicity. Jones CL, Tepe JJ. Molecules 24 (2019)
- Proteasome Biology: Chemistry and Bioengineering Insights. Račková L, Csekes E. Polymers (Basel) 12 E2909 (2020)
- Proteasome substrate receptors and their therapeutic potential. Osei-Amponsa V, Walters KJ. Trends Biochem Sci 47 950-964 (2022)
- Proteasome-mediated proteostasis: Novel medicinal and pharmacological strategies for diseases. Mishra R, Upadhyay A, Prajapati VK, Mishra A. Med Res Rev 38 1916-1973 (2018)
- Proteasomes and Several Aspects of Their Heterogeneity Relevant to Cancer. Morozov AV, Karpov VL. Front Oncol 9 761 (2019)
- To Kill or to Be Killed: How Does the Battle between the UPS and Autophagy Maintain the Intracellular Homeostasis in Eukaryotes? Yu P, Hua Z. Int J Mol Sci 24 2221 (2023)
- Wiggle and Shake: Managing and Exploiting Conformational Dynamics during Proteasome Biogenesis. Betancourt D, Lawal T, Tomko RJ. Biomolecules 13 1223 (2023)
Articles citing this publication (56)
- Structure of a AAA+ unfoldase in the process of unfolding substrate. Ripstein ZA, Huang R, Augustyniak R, Kay LE, Rubinstein JL. Elife 6 (2017)
- Structural insights into photosystem II assembly. Zabret J, Bohn S, Schuller SK, Arnolds O, Möller M, Meier-Credo J, Liauw P, Chan A, Tajkhorshid E, Langer JD, Stoll R, Krieger-Liszkay A, Engel BD, Rudack T, Schuller JM, Nowaczyk MM. Nat Plants 7 524-538 (2021)
- Katanin spiral and ring structures shed light on power stroke for microtubule severing. Zehr E, Szyk A, Piszczek G, Szczesna E, Zuo X, Roll-Mecak A. Nat. Struct. Mol. Biol. 24 717-725 (2017)
- The 26S Proteasome Utilizes a Kinetic Gateway to Prioritize Substrate Degradation. Bard JAM, Bashore C, Dong KC, Martin A. Cell 177 286-298.e15 (2019)
- The AAA ATPase Vps4 binds ESCRT-III substrates through a repeating array of dipeptide-binding pockets. Han H, Monroe N, Sundquist WI, Shen PS, Hill CP. Elife 6 (2017)
- A common mechanism of proteasome impairment by neurodegenerative disease-associated oligomers. Thibaudeau TA, Anderson RT, Smith DM. Nat Commun 9 1097 (2018)
- Conformational maps of human 20S proteasomes reveal PA28- and immuno-dependent inter-ring crosstalks. Lesne J, Locard-Paulet M, Parra J, Zivković D, Menneteau T, Bousquet MP, Burlet-Schiltz O, Marcoux J. Nat Commun 11 6140 (2020)
- The proteasome 19S cap and its ubiquitin receptors provide a versatile recognition platform for substrates. Martinez-Fonts K, Davis C, Tomita T, Elsasser S, Nager AR, Shi Y, Finley D, Matouschek A. Nat Commun 11 477 (2020)
- Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome. Dong Y, Zhang S, Wu Z, Li X, Wang WL, Zhu Y, Stoilova-McPhie S, Lu Y, Finley D, Mao Y. Nature 565 49-55 (2019)
- Proteasomes tether to two distinct sites at the nuclear pore complex. Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko JM, Beck M, Baumeister W, Engel BD. Proc. Natl. Acad. Sci. U.S.A. 114 13726-13731 (2017)
- Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating. Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko RJ, Sakata E. Cell Rep 24 1301-1315.e5 (2018)
- Structural mechanism for nucleotide-driven remodeling of the AAA-ATPase unfoldase in the activated human 26S proteasome. Zhu Y, Wang WL, Yu D, Ouyang Q, Lu Y, Mao Y. Nat Commun 9 1360 (2018)
- Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle. Majumder P, Rudack T, Beck F, Danev R, Pfeifer G, Nagy I, Baumeister W. Proc. Natl. Acad. Sci. U.S.A. 116 534-539 (2019)
- Direct visualization of degradation microcompartments at the ER membrane. Albert S, Wietrzynski W, Lee CW, Schaffer M, Beck F, Schuller JM, Salomé PA, Plitzko JM, Baumeister W, Engel BD. Proc Natl Acad Sci U S A 117 1069-1080 (2020)
- High-density chemical cross-linking for modeling protein interactions. Mintseris J, Gygi SP. Proc Natl Acad Sci U S A 117 93-102 (2020)
- Proline- and Arginine-Rich Peptides as Flexible Allosteric Modulators of Human Proteasome Activity. Giżyńska M, Witkowska J, Karpowicz P, Rostankowski R, Chocron ES, Pickering AM, Osmulski P, Gaczynska M, Jankowska E. J. Med. Chem. 62 359-370 (2019)
- Conformational switching in the coiled-coil domains of a proteasomal ATPase regulates substrate processing. Snoberger A, Brettrager EJ, Smith DM. Nat Commun 9 2374 (2018)
- Cryo-EM Reveals Unanchored M1-Ubiquitin Chain Binding at hRpn11 of the 26S Proteasome. Chen X, Dorris Z, Shi D, Huang RK, Khant H, Fox T, de Val N, Williams D, Zhang P, Walters KJ. Structure 28 1206-1217.e4 (2020)
- Crystal structure of a low molecular weight activator Blm-pep with yeast 20S proteasome - insights into the enzyme activation mechanism. Witkowska J, Giżyńska M, Grudnik P, Golik P, Karpowicz P, Giełdoń A, Dubin G, Jankowska E. Sci Rep 7 6177 (2017)
- GID E3 ligase supramolecular chelate assembly configures multipronged ubiquitin targeting of an oligomeric metabolic enzyme. Sherpa D, Chrustowicz J, Qiao S, Langlois CR, Hehl LA, Gottemukkala KV, Hansen FM, Karayel O, von Gronau S, Prabu JR, Mann M, Alpi AF, Schulman BA. Mol Cell 81 2445-2459.e13 (2021)
- Oxaliplatin promotes siMAD2L2‑induced apoptosis in colon cancer cells. Ma L, Li X, Zhao X, Sun H, Kong F, Li Y, Sui Y, Xu F. Mol Med Rep 24 629 (2021)
- Probing H2O2-mediated Structural Dynamics of the Human 26S Proteasome Using Quantitative Cross-linking Mass Spectrometry (QXL-MS). Yu C, Wang X, Huszagh AS, Viner R, Novitsky E, Rychnovsky SD, Huang L. Mol Cell Proteomics 18 954-967 (2019)
- The Proteasome and Its Network: Engineering for Adaptability. Finley D, Prado MA. Cold Spring Harb Perspect Biol 12 (2020)
- The proteasome as a druggable target with multiple therapeutic potentialities: Cutting and non-cutting edges. Tundo GR, Sbardella D, Santoro AM, Coletta A, Oddone F, Grasso G, Milardi D, Lacal PM, Marini S, Purrello R, Graziani G, Coletta M. Pharmacol Ther 213 107579 (2020)
- Allosteric control of Ubp6 and the proteasome via a bidirectional switch. Hung KYS, Klumpe S, Eisele MR, Elsasser S, Tian G, Sun S, Moroco JA, Cheng TC, Joshi T, Seibel T, Van Dalen D, Feng XH, Lu Y, Ovaa H, Engen JR, Lee BH, Rudack T, Sakata E, Finley D. Nat Commun 13 838 (2022)
- An Allosteric Interaction Network Promotes Conformation State-Dependent Eviction of the Nas6 Assembly Chaperone from Nascent 26S Proteasomes. Nemec AA, Peterson AK, Warnock JL, Reed RG, Tomko RJ. Cell Rep 26 483-495.e5 (2019)
- Characterization of Fully Recombinant Human 20S and 20S-PA200 Proteasome Complexes. Toste Rêgo A, da Fonseca PCA. Mol. Cell 76 138-147.e5 (2019)
- Conserved proline residues in the coiled coil-OB domain linkers of Rpt proteins facilitate eukaryotic proteasome base assembly. Cheng CL, Wong MK, Li Y, Hochstrasser M. J Biol Chem 296 100660 (2021)
- Constructing atomic structural models into cryo-EM densities using molecular dynamics - Pros and cons. Wang Y, Shekhar M, Thifault D, Williams CJ, McGreevy R, Richardson J, Singharoy A, Tajkhorshid E. J. Struct. Biol. 204 319-328 (2018)
- Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Density Maps. Sazzed S, Scheible P, Alshammari M, Wriggers W, He J. J Chem Inf Model 60 2644-2650 (2020)
- Engineered disulfide crosslinking to measure conformational changes in the 26S proteasome. Reed RG, Tomko RJ. Methods Enzymol 619 145-159 (2019)
- Proteasomal conformation controls unfolding ability. Cresti JR, Manfredonia AJ, Bragança CE, Boscia JA, Hurley CM, Cundiff MD, Kraut DA. Proc Natl Acad Sci U S A 118 e2101004118 (2021)
- Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy. Dodd T, Yan C, Ivanov I. J Chem Inf Model 60 2470-2483 (2020)
- Allosteric coupling between α-rings of the 20S proteasome. Yu Z, Yu Y, Wang F, Myasnikov AG, Coffino P, Cheng Y. Nat Commun 11 4580 (2020)
- An integrated workflow for crosslinking mass spectrometry. Mendes ML, Fischer L, Chen ZA, Barbon M, O'Reilly FJ, Giese SH, Bohlke-Schneider M, Belsom A, Dau T, Combe CW, Graham M, Eisele MR, Baumeister W, Speck C, Rappsilber J. Mol. Syst. Biol. 15 e8994 (2019)
- Assembly chaperone Nas6 selectively destabilizes 26S proteasomes with defective regulatory particle-core particle interfaces. Warnock JL, Jobin GW, Kumar S, Tomko RJ. J Biol Chem 299 102894 (2023)
- Assembly checkpoint of the proteasome regulatory particle is activated by coordinated actions of proteasomal ATPase chaperones. Nahar A, Sokolova V, Sekaran S, Orth JD, Park S. Cell Rep 39 110918 (2022)
- Cryo-EM of mammalian PA28αβ-iCP immunoproteasome reveals a distinct mechanism of proteasome activation by PA28αβ. Chen J, Wang Y, Xu C, Chen K, Zhao Q, Wang S, Yin Y, Peng C, Ding Z, Cong Y. Nat Commun 12 739 (2021)
- Cryo-EM structure of the ClpXP protein degradation machinery. Gatsogiannis C, Balogh D, Merino F, Sieber SA, Raunser S. Nat. Struct. Mol. Biol. 26 946-954 (2019)
- FAT10 and NUB1L cooperate to activate the 26S proteasome. Brockmann F, Catone N, Wünsch C, Offensperger F, Scheffner M, Schmidtke G, Aichem A. Life Sci Alliance 6 e202201463 (2023)
- High resolution structures define divergent and convergent mechanisms of archaeal proteasome activation. Chuah JJY, Rexroad MS, Smith DM. Commun Biol 6 733 (2023)
- Mechanism of proteasome gate modulation by assembly chaperones Pba1 and Pba2. Schnell HM, Ang J, Rawson S, Walsh RM, Micoogullari Y, Hanna J. J Biol Chem 298 101906 (2022)
- Mutant thermal proteome profiling for characterization of missense protein variants and their associated phenotypes within the proteome. Peck Justice SA, Barron MP, Qi GD, Wijeratne HRS, Victorino JF, Simpson ER, Vilseck JZ, Wijeratne AB, Mosley AL. J Biol Chem 295 16219-16238 (2020)
- NMR 1H, 13C, 15N backbone and side chain resonance assignment of the N-terminal domain of yeast proteasome lid subunit Rpn5. Zhang W, Zhao C, Hu Y, Jin C. Biomol NMR Assign 13 1-4 (2019)
- New Insights for Polyphenolic Compounds as Naturally Inspired Proteasome Inhibitors. Marchese E, Gallo Cantafio ME, Ambrosio FA, Torcasio R, Valentino I, Trapasso F, Viglietto G, Alcaro S, Costa G, Amodio N. Pharmaceuticals (Basel) 16 1712 (2023)
- Proteasome Inhibition Is an Effective Treatment Strategy for Microsporidia Infection in Honey Bees. Huntsman EM, Cho RM, Kogan HV, McNamara-Bordewick NK, Tomko RJ, Snow JW. Biomolecules 11 1600 (2021)
- Proteasome substrate capture and gate opening by the accessory factor PafE from Mycobacterium tuberculosis. Hu K, Jastrab JB, Zhang S, Kovach A, Zhao G, Darwin KH, Li H. J. Biol. Chem. 293 4713-4723 (2018)
- Saccharomyces cerevisiae as a Toolkit for COP9 Signalosome Research. Harshuk-Shabso D, Castel N, Israeli R, Harari S, Pick E. Biomolecules 11 497 (2021)
- Specific lid-base contacts in the 26s proteasome control the conformational switching required for substrate degradation. Greene ER, Goodall EA, de la Peña AH, Matyskiela ME, Lander GC, Martin A. Elife 8 (2019)
- Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate. Rüttermann M, Koci M, Lill P, Geladas ED, Kaschani F, Klink BU, Erdmann R, Gatsogiannis C. Nat Commun 14 5942 (2023)
- The YΦ motif defines the structure-activity relationships of human 20S proteasome activators. Opoku-Nsiah KA, de la Pena AH, Williams SK, Chopra N, Sali A, Lander GC, Gestwicki JE. Nat Commun 13 1226 (2022)
- The penultimate step of proteasomal ATPase assembly is mediated by a switch dependent on the chaperone Nas2. Sekaran S, Park S. J Biol Chem 299 102870 (2023)
- Two-Step Activation Mechanism of the ClpB Disaggregase for Sequential Substrate Threading by the Main ATPase Motor. Deville C, Franke K, Mogk A, Bukau B, Saibil HR. Cell Rep 27 3433-3446.e4 (2019)
- USP14-regulated allostery of the human proteasome by time-resolved cryo-EM. Zhang S, Zou S, Yin D, Zhao L, Finley D, Wu Z, Mao Y. Nature 605 567-574 (2022)
- Ubiquitin modulates 26S proteasome conformational dynamics and promotes substrate degradation. Jonsson E, Htet ZM, Bard JAM, Dong KC, Martin A. Sci Adv 8 eadd9520 (2022)
- Ubiquitin receptors are required for substrate-mediated activation of the proteasome's unfolding ability. Cundiff MD, Hurley CM, Wong JD, Boscia JA, Bashyal A, Rosenberg J, Reichard EL, Nassif ND, Brodbelt JS, Kraut DA. Sci Rep 9 14506 (2019)