5mgt

X-ray diffraction
1.9Å resolution

Complex of human NKR-P1 and LLT1 in deglycosylated forms

Released:
Source organism: Homo sapiens
Entry authors: Blaha J, Skalova T, Stransky J, Koval T, Hasek J, Yuguang Z, Harlos K, Vanek O, Dohnalek J

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
C-type lectin domain family 2 member D Chains: A, B
Molecule details ›
Chains: A, B
Length: 135 amino acids
Theoretical weight: 15.69 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q9UHP7 (Residues: 72-191; Coverage: 63%)
Gene names: CLAX, CLEC2D, LLT1, OCIL
Killer cell lectin-like receptor subfamily B member 1 Chains: C, D, E, F
Molecule details ›
Chains: C, D, E, F
Length: 146 amino acids
Theoretical weight: 17.11 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q12918 (Residues: 90-225; Coverage: 60%)
Gene names: CLEC5B, KLRB1, NKRP1A

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P212121
Unit cell:
a: 44.58Å b: 80.15Å c: 272.95Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.162 0.162 0.201
Expression system: Homo sapiens