› 5mgs

X-ray diffraction
1.9Å resolution

Human receptor NKR-P1 in deglycosylated form, extracellular domain

Released:
DOI: 10.2210/pdb5mgs/pdb
PDB 5mgs coloured by chain and viewed from the front.
PDB 5mgs coloured by chain and viewed from the side.
PDB 5mgs coloured by chain and viewed from the top.
Source organism: Homo sapiens
Entry authors: Skalova T, Blaha J, Stransky J, Koval T, Hasek J, Yuguang Z, Harlos K, Vanek O, Dohnalek J

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Killer cell lectin-like receptor subfamily B member 1 Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 146 amino acids
Theoretical weight: 17.11 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q12918 (Residues: 90-225; Coverage: 60%)
Gene names: CLEC5B, KLRB1, NKRP1A
Sequence domains: Lectin C-type domain
Structure domains: Mannose-Binding Protein A, subunit A

Ligands and Environments

1 bound ligand:
Ligand NAG 16 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P1
Unit cell:
a: 44.806Å b: 68.404Å c: 101.564Å
α: 101.88° β: 100.72° γ: 100.64°
R-values:
R R work R free
0.157 0.157 0.207
Expression system: Homo sapiens

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