› 5mdm

X-ray diffraction
3Å resolution

Structural intermediates in the fusion associated transition of vesiculovirus glycoprotein

Released:
DOI: 10.2210/pdb5mdm/pdb
PDB 5mdm coloured by chain and viewed from the front.
PDB 5mdm coloured by chain and viewed from the side.
PDB 5mdm coloured by chain and viewed from the top.
Source organism: Chandipura virus
Primary publication:
Structural intermediates in the fusion-associated transition of vesiculovirus glycoprotein.
Baquero E, Albertini AA, Raux H, Abou-Hamdan A, Boeri-Erba E, Ouldali M, Buonocore L, Rose JK, Lepault J, Bressanelli S, Gaudin Y
EMBO J. (2017)
PMID: 28188244

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (3 distinct):
Glycoprotein Chains: A, C, E, F
Molecule details ›
Chains: A, C, E, F
Length: 419 amino acids
Theoretical weight: 46.81 KDa
Source organism: Chandipura virus
UniProt:
  • Canonical: P13180 (Residues: 22-440; Coverage: 82%)
Gene name: G
Sequence domains: Rhabdovirus spike glycoprotein

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
Carbohydrate polymer : NEW Components: NAG, FUC
Carbohydrate polymer
2 bound ligands:
Ligand SO4 1 x SO4
Ligand NAG 2 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P21212
Unit cell:
a: 150.34Å b: 228.21Å c: 78.84Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.188 0.222

Quick links

Citations

2 review citations

Mass Spectrometry-Based Structural Virology.
Wörner et al. (2021)
1 more