PDBe 5m1b

X-ray diffraction
3.15Å resolution

Crystal structure of C-terminally tagged apo-UbiD from E. coli


Function and Biology Details

Reaction catalysed:
A 4-hydroxy-3-polyprenylbenzoate = a 2-polyprenylphenol + CO(2)
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Entry contents:
1 distinct polypeptide molecule
3-octaprenyl-4-hydroxybenzoate carboxy-lyase Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 505 amino acids
Theoretical weight: 56.74 KDa
Source organism: Escherichia coli CFT073
Expression system: Escherichia coli
  • Canonical: P0AAB5 (Residues: 1-497; Coverage: 100%)
Gene names: c4790, ubiD
Sequence domains: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
Structure domains:

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: P41212
Unit cell:
a: 210.187Å b: 210.187Å c: 109.01Å
α: 90° β: 90° γ: 90°
R R work R free
0.224 0.221 0.277
Expression system: Escherichia coli