PDBe 5lz6

X-ray diffraction
2.6Å resolution

Crystal structure of human ACBD3 GOLD domain in complex with 3A protein of Aichivirus B


Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Golgi resident protein GCP60, N-terminally processed Chain: A
Molecule details ›
Chain: A
Length: 166 amino acids
Theoretical weight: 19.26 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
  • Canonical: Q9H3P7 (Residues: 364-528; Coverage: 31%)
Gene names: ACBD3, GCP60, GOCAP1, GOLPH1
Sequence domains: Golgi-dynamics membrane-trafficking
Structure domains: GOLD domain
3A Chain: B
Molecule details ›
Chain: B
Length: 38 amino acids
Theoretical weight: 4.18 KDa
Source organism: Aichivirus B
Expression system: Escherichia coli BL21
  • Canonical: Q8BES6 (Residues: 1679-1716; Coverage: 2%)

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.1
Spacegroup: P3121
Unit cell:
a: 55.63Å b: 55.63Å c: 144.27Å
α: 90° β: 90° γ: 120°
R R work R free
0.217 0.215 0.26
Expression system: Escherichia coli BL21