5lsf

X-ray diffraction
2.1Å resolution

Sacbrood honeybee virus

Released:
Source organism: Sacbrood virus

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero 240-mer (preferred)
PDBe Complex ID:
PDB-CPX-104451 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (4 distinct):
VP1 Chain: A
Molecule details ›
Chain: A
Length: 243 amino acids
Theoretical weight: 27.66 KDa
Source organism: Sacbrood virus
UniProt:
  • Canonical: Q9WCE9 (Residues: 756-998; Coverage: 9%)
Gene name: pol
SF3 helicase domain-containing protein Chain: B
Molecule details ›
Chain: B
Length: 239 amino acids
Theoretical weight: 26.95 KDa
Source organism: Sacbrood virus
UniProt:
  • Canonical: A0A2S0CUG6 (Residues: 27-265; Coverage: 15%)
SF3 helicase domain-containing protein Chain: C
Molecule details ›
Chain: C
Length: 273 amino acids
Theoretical weight: 30.7 KDa
Source organism: Sacbrood virus
UniProt:
  • Canonical: A0A2S0CUG6 (Residues: 303-575; Coverage: 18%)
SF3 helicase domain-containing protein Chain: D
Molecule details ›
Chain: D
Length: 26 amino acids
Theoretical weight: 3.11 KDa
Source organism: Sacbrood virus
UniProt:
  • Canonical: A0A2S0CUG6 (Residues: 604-629; Coverage: 2%)

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 1
Spacegroup: C2
Unit cell:
a: 487.85Å b: 360.97Å c: 338.16Å
α: 90° β: 133.07° γ: 90°
R-values:
R R work R free
0.194 0.194 not available