5jiu

X-ray diffraction
2.05Å resolution

The crystal structure of RanBPM/9 IUS-SPRY domain in complex with DDX-4 peptide

Released:

Function and Biology Details

Reaction catalysed:
ATP + H(2)O = ADP + phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-178890 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Ran-binding protein 9 Chains: A, B
Molecule details ›
Chains: A, B
Length: 243 amino acids
Theoretical weight: 26.34 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q96S59 (Residues: 108-350; Coverage: 33%)
Gene names: RANBP9, RANBPM
Sequence domains: SPRY domain
Structure domains: Jelly Rolls
ATP-dependent RNA helicase DDX4 Chains: C, D
Molecule details ›
Chains: C, D
Length: 20 amino acids
Theoretical weight: 2.1 KDa
Source organism: Mus musculus
Expression system: Not provided
UniProt:
  • Canonical: Q61496 (Residues: 201-220; Coverage: 3%)
Gene names: Ddx4, Mvh, Vasa

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 5C (4A)
Spacegroup: I4
Unit cell:
a: 123.318Å b: 123.318Å c: 91.986Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.168 0.166 0.202
Expression systems:
  • Escherichia coli
  • Not provided