5imo

X-ray diffraction
2.1Å resolution

Nanobody targeting mouse Vsig4 in Spacegroup P3221

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-207861 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Nanobody Chain: B
Molecule details ›
Chain: B
Length: 131 amino acids
Theoretical weight: 14.6 KDa
Source organism: Camelidae
Expression system: Escherichia coli
Structure domains: Immunoglobulins
Ig-like domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 127 amino acids
Theoretical weight: 14.87 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: F6TUL9 (Residues: 19-139; Coverage: 46%)
Gene name: Vsig4
Sequence domains: Immunoglobulin V-set domain
Structure domains: Immunoglobulins

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P3221
Unit cell:
a: 49.906Å b: 49.906Å c: 183.72Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.245 0.241 0.281
Expression system: Escherichia coli