› 5ib9

X-ray diffraction
1.4Å resolution

Crystal structure of aminopeptidase equipped with PAD from Aneurinibacillus sp. AM-1

Released:
DOI: 10.2210/pdb5ib9/pdb
PDB entry 5ib9 coloured by chain, front view.
PDB entry 5ib9 coloured by chain, side view.
PDB entry 5ib9 coloured by chain, top view.
Source organism: Aneurinibacillus sp. AM-1
Entry authors: Tagawa R, Nakano H, Watanabe K

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-106980 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Aminopeptidase Chain: A
Molecule details ›
Chain: A
Length: 421 amino acids
Theoretical weight: 45.29 KDa
Source organism: Aneurinibacillus sp. AM-1
Expression system: Escherichia coli
UniProt:
  • Canonical: A2V759 (Residues: 36-456; Coverage: 98%)
Gene name: amp
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand ZN 6 x ZN
Ligand BES 1 x BES
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: P21212
Unit cell:
a: 93.18Å b: 68.443Å c: 76.589Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.181 0.179 0.223
Expression system: Escherichia coli

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