5i85

X-ray diffraction
2.5Å resolution

aSMase with zinc and phosphocholine

Released:

Function and Biology Details

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo tetramer
PDBe Complex ID:
PDB-CPX-148049 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (4 distinct):
Sphingomyelin phosphodiesterase Chain: A
Molecule details ›
Chain: A
Length: 583 amino acids
Theoretical weight: 65.11 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P17405 (Residues: 49-631; Coverage: 100%)
Gene names: ASM, SMPD1
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU FR-E+ SUPERBRIGHT
Spacegroup: P6422
Unit cell:
a: 131.601Å b: 131.601Å c: 188.573Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.192 0.19 0.222
Expression system: Homo sapiens