› 5h2q

X-ray diffraction
1.66Å resolution

Crystal structure of T brucei phosphodiesterase B2 bound to compound 13e

Released:
DOI: 10.2210/pdb5h2q/pdb
PDB 5h2q coloured by chain and viewed from the front.
PDB 5h2q coloured by chain and viewed from the side.
PDB 5h2q coloured by chain and viewed from the top.
Source organism: Trypanosoma brucei brucei TREU927
Entry author: Noble CG

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phosphodiesterase Chains: A, B
Molecule details ›
Chains: A, B
Length: 337 amino acids
Theoretical weight: 38.5 KDa
Source organism: Trypanosoma brucei brucei TREU927
UniProt:
  • Canonical: Q38F42 (Residues: 586-918; Coverage: 36%)
Gene name: Tb09.160.3630
Sequence domains: 3'5'-cyclic nucleotide phosphodiesterase
Structure domains: 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain

Ligands and Environments

3 bound ligands:
Ligand ZN 2 x ZN
Ligand MG 2 x MG
Ligand LLI 2 x LLI
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P3121
Unit cell:
a: 97.21Å b: 97.21Å c: 120.44Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.174 0.172 0.2

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