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Crystal structure of oxidized DapF from Corynebacterium glutamicum

X-ray diffraction
2Å resolution
PDB entry 5h2g coloured by chain, front view.
PDB entry 5h2g coloured by chain, side view.
PDB entry 5h2g coloured by chain, top view.
Source organism: Corynebacterium glutamicum ATCC 13032
Assembly composition:
homo dimer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Diaminopimelate epimerase
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Multimeric state: homo dimer
Accessible surface area: 23109.28 Å2
Buried surface area: 2342.12 Å2
Dissociation area: 979.9 Å2
Dissociation energy (ΔGdiss): 4.17 kcal/mol
Dissociation entropy (TΔSdiss): 13.24 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-185621

Macromolecules

Diaminopimelate epimerase
Chains: A, B
Length: 283 amino acids
Theoretical weight: 30.05 KDa
Source organism: Corynebacterium glutamicum ATCC 13032
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q8NP73 (Residues: 1-277; Coverage: 100%)
Gene names: Cgl1943, cg2129, dapF
Pfam: Diaminopimelate epimerase
InterPro:
CATH: Diaminopimelate Epimerase; Chain A, domain 1
Diaminopimelate epimerase in PDB entry 5h2g, assembly 1, front view.
Diaminopimelate epimerase in PDB entry 5h2g, assembly 1, side view.
Diaminopimelate epimerase in PDB entry 5h2g, assembly 1, top view.
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