› 5gx9

Neutron Diffraction
1.49Å resolution

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-147624 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Photoactive yellow protein Chain: A
Molecule details ›
Chain: A
Length: 125 amino acids
Theoretical weight: 13.89 KDa
Source organism: Halorhodospira halophila
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P16113 (Residues: 1-125; Coverage: 100%)
Gene name: pyp
Sequence domains: PAS fold
Structure domains: PAS domain

Ligands and Environments

2 bound ligands:
Ligand HC4 1 x HC4
Ligand DOD 80 x DOD
No modified residues

Experiments and Validation Details

Spacegroup: P63
Unit cell:
a: 66.823Å b: 66.823Å c: 40.982Å α: 90° β: 90° γ: 120°
R-values:
R R work R free 0.162 0.158 0.2
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

2 review citations

Aspartate or arginine? Validated redox state X-ray structures elucidate mechanistic subtleties of FeIV = O formation in bacterial dye-decolorizing peroxidases.
Lučić et al. (2021)
1 more

4 mentions without citation

Evaluation of models determined by neutron diffraction and proposed improvements to their validation and deposition.
Liebschner et al. (2018)
3 more