PDBe 5g52

X-ray diffraction
3.8Å resolution

Crystallographic structure of full particle of Deformed Wing Virus

Released:
Source organism: Deformed wing virus
Primary publication:
Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A. (2017)
PMID: 28270616

Function and Biology Details

Structure analysis Details

Assemblies composition:
hetero 180-mer (preferred)
hetero trimer
hetero 15-mer
hetero 18-mer
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
VP1 Chain: A
Molecule details ›
Chain: A
Length: 243 amino acids
Theoretical weight: 27.12 KDa
Source organism: Deformed wing virus
UniProt:
  • Canonical: Q8B3M2 (Residues: 902-1154; Coverage: 8%)
Sequence domains: CRPV capsid protein like
VP2 Chain: B
Molecule details ›
Chain: B
Length: 250 amino acids
Theoretical weight: 28.01 KDa
Source organism: Deformed wing virus
UniProt:
  • Canonical: Q8B3M2 (Residues: 212-461; Coverage: 9%)
Sequence domains: picornavirus capsid protein
VP3 Chain: C
Molecule details ›
Chain: C
Length: 397 amino acids
Theoretical weight: 44.48 KDa
Source organism: Deformed wing virus
UniProt:
  • Canonical: Q8B3M2 (Residues: 487-883; Coverage: 14%)
Sequence domains: picornavirus capsid protein

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 1
Spacegroup: I23
Unit cell:
a: 360.131Å b: 360.131Å c: 360.131Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.285 0.283 0.322