PDBe 5fpx

X-ray diffraction
1.5Å resolution

The structure of KdgF from Yersinia enterocolitica.

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Cupin_2 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 113 amino acids
Theoretical weight: 12.83 KDa
Source organism: Yersinia enterocolitica subsp. enterocolitica 8081
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A1JMF7 (Residues: 2-110; Coverage: 99%)
Gene names: YE1889, kdgF
Sequence domains: Cupin domain
Structure domains: Jelly Rolls
PEPTIDE Chains: E, F
Molecule details ›
Chains: E, F
Length: 8 amino acids
Theoretical weight: 940 Da
Source organism: Yersinia enterocolitica subsp. enterocolitica 8081
Expression system: Escherichia coli BL21(DE3)

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CLSI BEAMLINE 08ID-1
Spacegroup: P212121
Unit cell:
a: 39.92Å b: 73.76Å c: 83.68Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.173 0.171 0.199
Expression system: Escherichia coli BL21(DE3)