› 5e4l

X-ray diffraction
2.44Å resolution

Structure of ligand binding region of uPARAP at pH 5.3

Released:
DOI: 10.2210/pdb5e4l/pdb
PDB entry 5e4l coloured by chain, front view.
PDB entry 5e4l coloured by chain, side view.
PDB entry 5e4l coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Yuan C, Huang M

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-193652 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
C-type mannose receptor 2 Chains: A, B
Molecule details ›
Chains: A, B
Length: 492 amino acids
Theoretical weight: 55.88 KDa
Source organism: Homo sapiens
Expression system: Drosophila melanogaster
UniProt:
  • Canonical: Q9UBG0 (Residues: 31-510; Coverage: 33%)
Gene names: CLEC13E, ENDO180, KIAA0709, MRC2, UPARAP
Sequence domains:

Ligands and Environments

2 bound ligands:
Ligand CA 6 x CA
Ligand NAG 2 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P21
Unit cell:
a: 74.27Å b: 102.7Å c: 87.76Å
α: 90° β: 94.54° γ: 90°
R-values:
R R work R free
0.219 0.217 0.259
Expression system: Drosophila melanogaster

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