5dpw

X-ray diffraction
2.18Å resolution

Crystal structure of PLEKHM1 LIR in complex with human LC3C_8-125

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-189806 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Microtubule-associated proteins 1A/1B light chain 3C Chains: A, C, E, G, I, K, M, O
Molecule details ›
Chains: A, C, E, G, I, K, M, O
Length: 118 amino acids
Theoretical weight: 13.81 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9BXW4 (Residues: 8-125; Coverage: 80%)
Gene name: MAP1LC3C
Sequence domains: Autophagy protein Atg8 ubiquitin like
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Pleckstrin homology domain-containing family M member 1 Chains: B, D, F, H, J, L, N, P
Molecule details ›
Chains: B, D, F, H, J, L, N, P
Length: 14 amino acids
Theoretical weight: 1.75 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9Y4G2 (Residues: 629-642; Coverage: 1%)
Gene names: KIAA0356, PLEKHM1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Spacegroup: P1
Unit cell:
a: 54.14Å b: 73.225Å c: 89.048Å
α: 89.96° β: 89.99° γ: 77.31°
R-values:
R R work R free
0.201 0.2 0.246
Expression system: Escherichia coli BL21(DE3)