› 5dkv

X-ray diffraction
1.68Å resolution

Crystal Structure of an ABC transporter Solute Binding Protein from Agrobacterium vitis(Avis_5339, TARGET EFI-511225) bound with alpha-D-Tagatopyranose

Released:
DOI: 10.2210/pdb5dkv/pdb
PDB 5dkv coloured by chain and viewed from the front.
PDB 5dkv coloured by chain and viewed from the side.
PDB 5dkv coloured by chain and viewed from the top.
Source organism: Agrobacterium vitis S4
Entry authors: Yadava U, Al Obaidi NF, Morisco LL, Benach J, Koss J, Wasserman SR, Attonito JD, Scott Glenn A, Chamala S, Chowdhury S, Lafleur J, Love J, Seidel RD, Whalen KL, Gerlt JA, Almo SC, Enzyme Function Initiative (EFI)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peripla_BP_4 domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 324 amino acids
Theoretical weight: 33.99 KDa
Source organism: Agrobacterium vitis S4
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: B9K0T2 (Residues: 29-329; Coverage: 100%)
Gene names: Avi_5339, rbsB
Sequence domains: Periplasmic binding protein domain

Ligands and Environments

1 bound ligand:
Ligand T6T 4 x T6T
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P1
Unit cell:
a: 56.181Å b: 65.887Å c: 79.66Å
α: 87.41° β: 90.26° γ: 82.23°
R-values:
R R work R free
0.135 0.133 0.171
Expression system: Escherichia coli BL21(DE3)

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