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Crystal structure of murine polyomavirus PTA strain VP1 in complex with the GT1a glycan

X-ray diffraction
1.75Å resolution
PDB entry 5cpw coloured by chain, front view.
PDB entry 5cpw coloured by chain, side view.
PDB entry 5cpw coloured by chain, top view.
Source organism: Mus musculus polyomavirus 1
Assembly composition:
homo pentamer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Capsid protein VP1
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Multimeric state: homo pentamer
Accessible surface area: 53181.44 Å2
Buried surface area: 32353.05 Å2
Dissociation area: 11,116.11 Å2
Dissociation energy (ΔGdiss): 161.7 kcal/mol
Dissociation entropy (TΔSdiss): 58.21 kcal/mol
Symmetry number: 5
PDBe Complex ID: PDB-CPX-155915

Macromolecules

Capsid protein VP1
Chains: A, B, C, D, E
Length: 284 amino acids
Theoretical weight: 31.63 KDa
Source organism: Mus musculus polyomavirus 1
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P49302 (Residues: 34-317; Coverage: 74%)
Pfam: Polyomavirus coat protein
InterPro:
CATH: Capsid protein VP1,Polyomavirus
Capsid protein VP1 in PDB entry 5cpw, assembly 1, front view.
Capsid protein VP1 in PDB entry 5cpw, assembly 1, side view.
Capsid protein VP1 in PDB entry 5cpw, assembly 1, top view.
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