› 5bz7

X-ray diffraction
2.03Å resolution

X-ray crystal structure of a continuously hydrogen bonded 14mer DNA lattice.

Released:
DOI: 10.2210/pdb5bz7/pdb
PDB entry 5bz7 coloured by chain, front view.
PDB entry 5bz7 coloured by chain, side view.
PDB entry 5bz7 coloured by chain, top view.
Source organism: synthetic construct
Primary publication:
Sequence-dependent structural changes in a self-assembling DNA oligonucleotide.
Saoji M, Paukstelis PJ
Acta Crystallogr D Biol Crystallogr 71 2471-8 (2015)
PMID: 26627654

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-118451 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*GP*GP*AP*AP*AP*AP*TP*TP*TP*GP*GP*AP*GP*A)-3') Chain: A
Molecule details ›
Chain: A
Length: 14 nucleotides
Theoretical weight: 4.39 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand MG 2 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: P3121
Unit cell:
a: 26.013Å b: 26.013Å c: 122.022Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.239 0.234 0.293
Expression system: Not provided

Quick links

Citations

3 citation in other articles

Nanocellulose Composites as Smart Devices With Chassis, Light-Directed DNA Storage, Engineered Electronic Properties, and Chip Integration.
Bencurova et al. (2022)
2 more

1 mention without citation

Sequence-dependent structural changes in a self-assembling DNA oligonucleotide.
Saoji et al. (2015)