› 5b6q

X-ray diffraction
1.78Å resolution

Crystal structure of monomeric cytochrome c5 from Shewanella violacea

Released:
DOI: 10.2210/pdb5b6q/pdb
PDB 5b6q coloured by chain and viewed from the front.
PDB 5b6q coloured by chain and viewed from the side.
PDB 5b6q coloured by chain and viewed from the top.
Source organism: Shewanella violacea
Primary publication:
Comparative study on stabilization mechanism of monomeric cytochrome c5 from deep-sea piezophilic Shewanella violacea.
Masanari M, Fujii S, Kawahara K, Oki H, Tsujino H, Maruno T, Kobayashi Y, Ohkubo T, Wakai S, Sambongi Y
Biosci. Biotechnol. Biochem. 80 2365-2370 (2016)
PMID: 27648635

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 76 amino acids
Theoretical weight: 8.01 KDa
Source organism: Shewanella violacea
Expression system: Escherichia coli
UniProt:
  • Canonical: D4ZE39 (Residues: 32-107; Coverage: 100%)
Gene names: SVI_4129, cytcA
Structure domains: Cytochrome c-like domain

Ligands and Environments

2 bound ligands:
Ligand HEC 2 x HEC
Ligand IMD 1 x IMD
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007
Spacegroup: P212121
Unit cell:
a: 26.588Å b: 50.075Å c: 97.609Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.216 0.214 0.238
Expression system: Escherichia coli

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Citations

1 review citation

Biochemical and thermodynamic analyses of energy conversion in extremophiles.
Wakai S. (2019)
3 other articles