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Mechanism of eIF6 release from the nascent 60S ribosomal subunit

Source organisms:
Biochemical function: structural constituent of ribosome
Biological process: translation
Cellular component: ribonucleoprotein complex

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GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF00347
Domain description: Ribosomal protein L6
Occurring in:
  1. Large ribosomal subunit protein uL6
The deposited structure of PDB entry 5anb contains 2 copies of Pfam domain PF00347 (Ribosomal protein L6) in Large ribosomal subunit protein uL6. Showing 2 copies in chain B.

PF00679
Domain description: Elongation factor G C-terminus
Occurring in:
  1. Elongation factor-like GTPase 1
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF00679 (Elongation factor G C-terminus) in Elongation factor-like GTPase 1. Showing 1 copy in chain K.

PF14492
Domain description: Elongation Factor G, domain III
Occurring in:
  1. Elongation factor-like GTPase 1
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF14492 (Elongation Factor G, domain III) in Elongation factor-like GTPase 1. Showing 1 copy in chain K.

PF00009
Domain description: Elongation factor Tu GTP binding domain
Occurring in:
  1. Elongation factor-like GTPase 1
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF00009 (Elongation factor Tu GTP binding domain) in Elongation factor-like GTPase 1. Showing 1 copy in chain K.

PF20268
Domain description: SBDS protein, C-terminal domain
Occurring in:
  1. Ribosome maturation protein SBDS
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF20268 (SBDS protein, C-terminal domain) in Ribosome maturation protein SBDS. Showing 1 copy in chain J.

PF09377
Domain description: SBDS protein, domain II
Occurring in:
  1. Ribosome maturation protein SBDS
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF09377 (SBDS protein, domain II) in Ribosome maturation protein SBDS. Showing 1 copy in chain J.

PF01172
Domain description: Shwachman-Bodian-Diamond syndrome (SBDS) protein
Occurring in:
  1. Ribosome maturation protein SBDS
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF01172 (Shwachman-Bodian-Diamond syndrome (SBDS) protein) in Ribosome maturation protein SBDS. Showing 1 copy in chain J.

PF01912
Domain description: eIF-6 family
Occurring in:
  1. Eukaryotic translation initiation factor 6
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF01912 (eIF-6 family) in Eukaryotic translation initiation factor 6. Showing 1 copy in chain I.

PF01020
Domain description: Ribosomal L40e family
Occurring in:
  1. Large ribosomal subunit protein eL40
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF01020 (Ribosomal L40e family) in Large ribosomal subunit protein eL40. Showing 1 copy in chain H.

PF01246
Domain description: Ribosomal protein L24e
Occurring in:
  1. Large ribosomal subunit protein eL24
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF01246 (Ribosomal protein L24e) in Large ribosomal subunit protein eL24. Showing 1 copy in chain G.

PF00252
Domain description: Ribosomal protein L16p/L10e
Occurring in:
  1. Large ribosomal subunit protein uL16
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF00252 (Ribosomal protein L16p/L10e) in Large ribosomal subunit protein uL16. Showing 1 copy in chain F.

PF00238
Domain description: Ribosomal protein L14p/L23e
Occurring in:
  1. Large ribosomal subunit protein uL14
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF00238 (Ribosomal protein L14p/L23e) in Large ribosomal subunit protein uL14. Showing 1 copy in chain E.

PF00298
Domain description: Ribosomal protein L11, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF00298 (Ribosomal protein L11, RNA binding domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain D.

PF03946
Domain description: Ribosomal protein L11, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF03946 (Ribosomal protein L11, N-terminal domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain D.

PF17777
Domain description: Insertion domain in 60S ribosomal protein L10P
Occurring in:
  1. Large ribosomal subunit protein uL10
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF17777 (Insertion domain in 60S ribosomal protein L10P) in Large ribosomal subunit protein uL10. Showing 1 copy in chain C.

PF00466
Domain description: Ribosomal protein L10
Occurring in:
  1. Large ribosomal subunit protein uL10
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF00466 (Ribosomal protein L10) in Large ribosomal subunit protein uL10. Showing 1 copy in chain C.

PF00297
Domain description: Ribosomal protein L3
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 5anb contains 1 copy of Pfam domain PF00297 (Ribosomal protein L3) in Large ribosomal subunit protein uL3. Showing 1 copy in chain A.

Rfam RNA family (Rfam)
RF02543
Domain description: Eukaryotic large subunit ribosomal RNA
Occurring in:
  1. 26S RIBOSOMAL RNA
The deposited structure of PDB entry 5anb contains 1 copy of Rfam domain RF02543 (Eukaryotic large subunit ribosomal RNA) in 26S RIBOSOMAL RNA. Showing 1 copy in chain L [auth N].

InterPro InterPro annotations
IPR000795
Domain description: Translational (tr)-type GTP-binding domain
Occurring in:
  1. Elongation factor-like GTPase 1
IPR002769
Domain description: Translation initiation factor IF6
Occurring in:
  1. Eukaryotic translation initiation factor 6
IPR000911
Domain description: Ribosomal protein uL11
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR036789
Domain description: Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR000988
Domain description: Large ribosomal subunit protein eL24-related
Occurring in:
  1. Large ribosomal subunit protein eL24
IPR001197
Domain description: Large ribosomal subunit protein uL16, eukaryotes/archaea
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR000218
Domain description: Large ribosomal subunit protein uL14
Occurring in:
  1. Large ribosomal subunit protein uL14
IPR000640
Domain description: Elongation factor EFG, domain V-like
Occurring in:
  1. Elongation factor-like GTPase 1
IPR035647
Domain description: EF-G domain III/V-like
Occurring in:
  1. Elongation factor-like GTPase 1
IPR027417
Domain description: P-loop containing nucleoside triphosphate hydrolase
Occurring in:
  1. Elongation factor-like GTPase 1
IPR037188
Domain description: Ribosome maturation protein Sdo1/SBDS, central domain superfamily
Occurring in:
  1. Ribosome maturation protein SBDS
IPR036786
Domain description: Ribosome maturation protein SBDS, N-terminal domain superfamily
Occurring in:
  1. Ribosome maturation protein SBDS
IPR001975
Domain description: Large ribosomal subunit protein eL40 domain
Occurring in:
  1. Large ribosomal subunit protein eL40
IPR036920
Domain description: Large ribosomal subunit protein uL16 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR036853
Domain description: Large ribosomal subunit protein uL14 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL14
IPR036769
Domain description: Large ribosomal subunit protein uL11, C-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR036796
Domain description: Large ribosomal subunit protein uL11, N-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR043141
Domain description: Large ribosomal subunit protein uL10-like domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL10
IPR020040
Domain description: Large ribosomal subunit protein uL6, alpha-beta domain
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR009000
Domain description: Translation protein, beta-barrel domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL3
  2. Elongation factor-like GTPase 1
IPR014721
Domain description: Small ribosomal subunit protein uS5 domain 2-type fold, subgroup
Occurring in:
  1. Elongation factor-like GTPase 1
IPR020568
Domain description: Ribosomal protein uS5 domain 2-type superfamily
Occurring in:
  1. Elongation factor-like GTPase 1
IPR041095
Domain description: Elongation Factor G, domain II
Occurring in:
  1. Elongation factor-like GTPase 1
IPR005225
Domain description: Small GTP-binding protein domain
Occurring in:
  1. Elongation factor-like GTPase 1
IPR046928
Domain description: Ribosome maturation protein SDO1/SBDS, C-terminal domain
Occurring in:
  1. Ribosome maturation protein SBDS
IPR018978
Domain description: Ribosome maturation protein SDO1/SBDS, central domain
Occurring in:
  1. Ribosome maturation protein SBDS
IPR018023
Domain description: Ribosome maturation protein SBDS, conserved site
Occurring in:
  1. Ribosome maturation protein SBDS
IPR019783
Domain description: Ribosome maturation protein SDO1/SBDS, N-terminal
Occurring in:
  1. Ribosome maturation protein SBDS
IPR002140
Domain description: Ribosome maturation protein Sdo1/SBDS
Occurring in:
  1. Ribosome maturation protein SBDS
IPR039100
Domain description: Ribosome maturation protein Sdo1/SBDS-like
Occurring in:
  1. Ribosome maturation protein SBDS
IPR038587
Domain description: Large ribosomal subunit protein eL40 superfamily
Occurring in:
  1. Large ribosomal subunit protein eL40
IPR011332
Domain description: Zinc-binding ribosomal protein
Occurring in:
  1. Large ribosomal subunit protein eL40
IPR023442
Domain description: Large ribosomal subunit protein eL24, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL24
IPR038630
Domain description: Ribosomal protein L24e/L24 superfamily
Occurring in:
  1. Large ribosomal subunit protein eL24
IPR018255
Domain description: Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaea
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR016180
Domain description: Large ribosomal subunit protein uL16 domain
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR047873
Domain description: Large ribosomal subunit protein uL16
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR020783
Domain description: Large ribosomal subunit protein uL11, C-terminal
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR020784
Domain description: Large ribosomal subunit protein uL11, N-terminal
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR040637
Domain description: Large ribosomal subunit protein uL10-like, insertion domain
Occurring in:
  1. Large ribosomal subunit protein uL10
IPR043164
Domain description: Large ribosomal subunit protein uL10-like, insertion domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL10
IPR001790
Domain description: Large ribosomal subunit protein uL10
Occurring in:
  1. Large ribosomal subunit protein uL10
IPR002359
Domain description: Large ribosomal subunit protein uL6, conserved site-2
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR000702
Domain description: Large ribosomal subunit protein uL6-like
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR019926
Domain description: Large ribosomal subunit protein uL3, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR045077
Domain description: Large ribosomal subunit protein uL3, archaeal/eukaryotic-type
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR044892
Domain description: Ribosomal protein L3, domain 3, archaeal-type superfamily
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR000597
Domain description: Large ribosomal subunit protein uL3
Occurring in:
  1. Large ribosomal subunit protein uL3

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