5ajd

X-ray diffraction
3.62Å resolution

Not1 C-terminal domain in complex with Not4

Released:

Function and Biology Details

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-150544 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
General negative regulator of transcription subunit 1 Chains: A, C, E, G, I, K
Molecule details ›
Chains: A, C, E, G, I, K
Length: 556 amino acids
Theoretical weight: 64.81 KDa
Source organism: Saccharomyces cerevisiae CEN.PK113-7D
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P25655 (Residues: 1541-2093; Coverage: 26%)
Gene names: CDC39, NOT1, ROS1, YCR093W, YCR1151, YCR93W
Sequence domains: CCR4-Not complex component, Not1
Structure domains:
General negative regulator of transcription subunit 4 Chains: B, D, F, H, J, L
Molecule details ›
Chains: B, D, F, H, J, L
Length: 65 amino acids
Theoretical weight: 7.43 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P34909 (Residues: 418-477; Coverage: 10%)
Gene names: CCL1, MOT2, NOT4, SIG1, SSF1, YER068W

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P3221
Unit cell:
a: 173.658Å b: 173.658Å c: 262.612Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.269 0.266 0.319
Expression system: Escherichia coli BL21(DE3)