PDBe 5yik

X-ray diffraction
3.1Å resolution

Structure of a Legionella effector with its substrate


Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
SdeA Chain: A
Molecule details ›
Chain: A
Length: 968 amino acids
Theoretical weight: 109.79 KDa
Source organism: Legionella pneumophila
Expression system: Escherichia coli
  • Canonical: Q6RCR0 (Residues: 236-1195; Coverage: 64%)
Ubiquitin Chains: C, D, F
Molecule details ›
Chains: C, D, F
Length: 78 amino acids
Theoretical weight: 8.8 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
  • Canonical: P0CG47 (Residues: 153-228; Coverage: 33%)
Gene name: UBB
Sequence domains: Ubiquitin family

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U1
Spacegroup: C2
Unit cell:
a: 108.846Å b: 145.893Å c: 104.088Å
α: 90° β: 104.46° γ: 90°
R R work R free
0.226 0.223 0.279
Expression system: Escherichia coli