5or7

X-ray diffraction
2.05Å resolution

Atomic structure of the murine norovirus protruding domain and sCD300lf receptor complex

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-108508 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Capsid protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 541 amino acids
Theoretical weight: 58.82 KDa
Source organism: Murine norovirus GV/CR10/2005/USA
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A7YK37 (Residues: 1-541; Coverage: 100%)
Sequence domains:
Structure domains:
CMRF35-like molecule 1 Chain: C
Molecule details ›
Chain: C
Length: 330 amino acids
Theoretical weight: 36.02 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q6SJQ7 (Residues: 1-337; Coverage: 98%)
Gene names: Cd300lf, Clm1, Lmir3
Sequence domains:
Structure domains: Immunoglobulins

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P212121
Unit cell:
a: 75.11Å b: 77.46Å c: 140.95Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.182 0.18 0.217
Expression systems:
  • Escherichia coli BL21(DE3)
  • Escherichia coli