5omm

X-ray diffraction
1.7Å resolution

GII.10 Vietnam 026 protruding domain in complex with Nanobody Nano-14

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Capsid protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 315 amino acids
Theoretical weight: 34.51 KDa
Source organism: Norovirus GII.10
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q5F4T5 (Residues: 224-538; Coverage: 58%)
Nanobody (VHH) Nano-14 Chain: C
Molecule details ›
Chain: C
Length: 119 amino acids
Theoretical weight: 12.98 KDa
Source organism: Vicugna pacos
Expression system: Escherichia coli

Ligands and Environments

1 bound ligand:

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE MASSIF-3
Spacegroup: C2
Unit cell:
a: 97.512Å b: 94.209Å c: 101.284Å
α: 90° β: 112.7° γ: 90°
R-values:
R R work R free
0.166 0.166 0.193
Expression systems:
  • Escherichia coli BL21(DE3)
  • Escherichia coli