› 5hd3

X-ray diffraction
1.6Å resolution

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-147624 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Photoactive yellow protein Chain: A
Molecule details ›
Chain: A
Length: 125 amino acids
Theoretical weight: 14.03 KDa
Source organism: Halorhodospira halophila
Expression system: Escherichia coli
UniProt:
  • Canonical: P16113 (Residues: 1-125; Coverage: 100%)
Gene name: pyp
Sequence domains: PAS fold
Structure domains: PAS domain

Ligands and Environments

No bound ligands
1 modified residue:
Ligand 60F 1 x 60F

Experiments and Validation Details

Entry percentile scores
X-ray source: SLAC LCLS BEAMLINE CXI
Spacegroup: P63
Unit cell:
a: 66.9Å b: 66.9Å c: 40.8Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.155 0.154 0.181
Expression system: Escherichia coli

Quick links

Citations

26 review citations

The cryo-EM method microcrystal electron diffraction (MicroED).
Nannenga et al. (2019)
25 more

4 mentions without citation

Optophysiology: Illuminating cell physiology with optogenetics.
Tan et al. (2022)
3 more