PDBe 5d94

X-ray diffraction
1.53Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Microtubule-associated proteins 1A/1B light chain 3B Chain: A
Molecule details ›
Chain: A
Length: 130 amino acids
Theoretical weight: 15.12 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
  • Canonical: Q9GZQ8 (Residues: 1-125; Coverage: 100%)
Gene names: MAP1ALC3, MAP1LC3B
Sequence domains: Autophagy protein Atg8 ubiquitin like
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
FYVE and coiled-coil domain-containing protein 1 Chain: B
Molecule details ›
Chain: B
Length: 13 amino acids
Theoretical weight: 1.49 KDa
Source organism: Homo sapiens
Expression system: Not provided
  • Canonical: Q9BQS8 (Residues: 1276-1288; Coverage: 1%)
Gene names: FYCO1, ZFYVE7

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: P21
Unit cell:
a: 40.724Å b: 39.162Å c: 42.756Å
α: 90° β: 115.05° γ: 90°
R R work R free
0.177 0.175 0.215
Expression systems:
  • Escherichia coli
  • Not provided