PDBe 5cq0

X-ray diffraction
1.9Å resolution

Crystal structure of murine polyomavirus RA strain VP1 in complex with the GD1a glycan


Function and Biology Details

Structure analysis Details

Assembly composition:
homo pentamer (preferred)
Entry contents:
1 distinct polypeptide molecule
Capsid protein VP1 Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 284 amino acids
Theoretical weight: 31.56 KDa
Source organism: Mouse polyomavirus (strain p16 small-plaque)
Expression system: Escherichia coli BL21(DE3)
  • Canonical: P49302 (Residues: 34-317; Coverage: 74%)
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P3121
Unit cell:
a: 219.06Å b: 219.06Å c: 99.4Å
α: 90° β: 90° γ: 120°
R R work R free
0.155 0.155 0.178
Expression system: Escherichia coli BL21(DE3)