PDBe 5cpx

X-ray diffraction
1.87Å resolution

Crystal structure of murine polyomavirus PTA strain VP1 in complex with the DSLNT glycan

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
homo pentamer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein VP1 Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 284 amino acids
Theoretical weight: 31.63 KDa
Source organism: Mus musculus polyomavirus 1
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P49302 (Residues: 34-317; Coverage: 74%)
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments


No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-1
Spacegroup: P3121
Unit cell:
a: 219.73Å b: 219.73Å c: 100Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.154 0.154 0.176
Expression system: Escherichia coli BL21(DE3)