PDBe 5cpw

X-ray diffraction
1.75Å resolution

Crystal structure of murine polyomavirus PTA strain VP1 in complex with the GT1a glycan


Function and Biology Details

Structure analysis Details

Assembly composition:
homo pentamer (preferred)
Entry contents:
1 distinct polypeptide molecule
Capsid protein VP1 Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 284 amino acids
Theoretical weight: 31.63 KDa
Source organism: Mus musculus polyomavirus 1
Expression system: Escherichia coli BL21(DE3)
  • Canonical: P49302 (Residues: 34-317; Coverage: 74%)
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P3121
Unit cell:
a: 219.6Å b: 219.6Å c: 99.74Å
α: 90° β: 90° γ: 120°
R R work R free
0.161 0.16 0.181
Expression system: Escherichia coli BL21(DE3)