PDBe 5b6c

X-ray diffraction
1.55Å resolution

Structural Details of Ufd1 binding to p97

Released:

Function and Biology Details

Reaction catalysed:
ATP + H(2)O = ADP + phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Transitional endoplasmic reticulum ATPase Chain: A
Molecule details ›
Chain: A
Length: 174 amino acids
Theoretical weight: 19.73 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P55072 (Residues: 21-191; Coverage: 21%)
Gene name: VCP
Sequence domains:
Structure domains:
Ubiquitin recognition factor in ER-associated degradation protein 1 Chain: B
Molecule details ›
Chain: B
Length: 11 amino acids
Theoretical weight: 1.21 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q92890 (Residues: 225-235; Coverage: 4%)
Gene names: UFD1, UFD1L

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 5C (4A)
Spacegroup: R3
Unit cell:
a: 107.27Å b: 107.27Å c: 44.04Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.16 0.158 0.2
Expression system: Escherichia coli