› 4yyv

X-ray diffraction
1.9Å resolution

Ficin isoform C crystal form II

Released:
DOI: 10.2210/pdb4yyv/pdb
PDB entry 4yyv coloured by chain, front view.
PDB entry 4yyv coloured by chain, side view.
PDB entry 4yyv coloured by chain, top view.
Source organism: Ficus carica
Entry authors: Azarkan M, Baeyens-Volant D, Loris R

Function and Biology Details

Reaction catalysed: 
Similar to that of papain.
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-103156 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptidase C1A papain C-terminal domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 222 amino acids
Theoretical weight: 24.24 KDa
Source organism: Ficus carica
UniProt:
  • Canonical: A0A182DW09 (Residues: 1-222; Coverage: 100%)
Sequence domains: Papain family cysteine protease
Structure domains: Cysteine proteinases

Ligands and Environments

2 bound ligands:
Ligand SO4 5 x SO4
Ligand 16P 1 x 16P
1 modified residue:
Ligand SCH 1 x SCH

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 1
Spacegroup: P43212
Unit cell:
a: 52.471Å b: 52.471Å c: 157.229Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.177 0.174 0.244

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