4yn3

X-ray diffraction
1.95Å resolution

Crystal structure of Cucumisin complex with pro-peptide

Released:

Function and Biology Details

Structure analysis Details

Assemblies composition:
monomeric
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-174456 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (4 distinct):
Cucumisin Chain: A
Molecule details ›
Chain: A
Length: 621 amino acids
Theoretical weight: 66.33 KDa
Source organism: Cucumis melo
UniProt:
  • Canonical: Q39547 (Residues: 111-731; Coverage: 88%)
Sequence domains:
Structure domains:
Cucumisin Chain: B
Molecule details ›
Chain: B
Length: 96 amino acids
Theoretical weight: 10.66 KDa
Source organism: Cucumis melo
Expression system: Escherichia coli
UniProt:
  • Canonical: Q39547 (Residues: 23-110; Coverage: 12%)
Sequence domains: Peptidase inhibitor I9
Structure domains: Peptidase S8 propeptide/proteinase inhibitor I9

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, MAN, FUC
Carbohydrate polymer : NEW Components: NAG, FUC
3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL32XU
Spacegroup: P42
Unit cell:
a: 97.738Å b: 97.738Å c: 73.433Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.184 0.184 0.222
Expression system: Escherichia coli