X-ray diffraction
2.01Å resolution

Crystal structure of LigD in complex with NADH from Sphingobium sp. strain SYK-6


Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
C alpha-dehydrogenase Chain: A
Molecule details ›
Chain: A
Length: 305 amino acids
Theoretical weight: 32.38 KDa
Source organism: Sphingobium sp. SYK-6
Expression system: Escherichia coli
  • Canonical: G2IN91 (Residues: 1-305; Coverage: 100%)
Gene names: SLG_08640, ligD
Sequence domains: short chain dehydrogenase
Structure domains: NAD(P)-binding Rossmann-like Domain

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: P3121
Unit cell:
a: 61.762Å b: 61.762Å c: 134.713Å
α: 90° β: 90° γ: 120°
R R work R free
0.215 0.211 0.248
Expression system: Escherichia coli