› 4xxl

X-ray diffraction
1.47Å resolution

Crystal structure of Class 1 cytochrome MtoD from Sideroxydans lithotrophicus ES-1

Released:
DOI: 10.2210/pdb4xxl/pdb
PDB 4xxl coloured by chain and viewed from the front.
PDB 4xxl coloured by chain and viewed from the side.
PDB 4xxl coloured by chain and viewed from the top.
Source organism: Sideroxydans lithotrophicus ES-1
Primary publication:
Characterization of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth.
Beckwith CR, Edwards MJ, Lawes M, Shi L, Butt JN, Richardson DJ, Clarke TA
Front Microbiol 6 332 (2015)
PMID: 25972843

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 125 amino acids
Theoretical weight: 13.76 KDa
Source organism: Sideroxydans lithotrophicus ES-1
Expression system: Shewanella oneidensis MR-1
UniProt:
  • Canonical: D5CN26 (Residues: 1-117; Coverage: 100%)
Gene name: Slit_2498
Sequence domains: Cytochrome c
Structure domains: Cytochrome c-like domain

Ligands and Environments

1 bound ligand:
Ligand HEC 1 x HEC
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P21212
Unit cell:
a: 92.18Å b: 40.2Å c: 29.7Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.192 0.19 0.23
Expression system: Shewanella oneidensis MR-1

Quick links

Citations

1 review citation

Extracellular electron transfer mechanisms between microorganisms and minerals.
Shi et al. (2016)
6 other articles